Predicting TF-DNA Binding Motifs from ChIP-seq Datasets Using the Bag-Based Classifier Combined With a Multi-Fold Learning Scheme.
Qinhu ZhangDailun WangKyungsook HanDe-Shuang HuangPublished in: IEEE ACM Trans. Comput. Biol. Bioinform. (2021)
Keyphrases
- learning scheme
- transcription factors
- dna binding
- chip seq
- binding sites
- microarray
- learning algorithm
- component analysis
- genome wide
- dna sequences
- gene expression
- computational biology
- regulatory networks
- co occurrence
- motif discovery
- highly correlated
- systems biology
- feature selection
- high throughput
- saccharomyces cerevisiae
- sequence data
- gene sets
- protein families
- biomedical literature
- experimental conditions
- biological processes
- transcription factor binding sites
- data sets
- feature space
- biological sequences
- statistical tests
- microarray data
- factor analysis
- cis regulatory
- gene expression data
- knowledge discovery
- statistical significance