Siguo Wang

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 17

Top Topics

Convolutional Neural Network

Top Venues

IEEE ACM Trans. Comput. Biol. Bioinform.

Briefings Bioinform.

IEEE J. Biomed. Health Informatics

Publications

Zhen-Hao Guo, Yan-Bin Wang, Siguo Wang, Qinhu Zhang, De-Shuang Huang
scCorrector: a robust method for integrating multi-study single-cell data. Briefings Bioinform. 25 (2) (2024)
Zhanheng Chen, Zhuhong You, Qinhu Zhang, Zhen-Hao Guo, Siguo Wang, Yanbin Wang
In silico prediction methods of self-interacting proteins: an empirical and academic survey. Frontiers Comput. Sci. 17 (3) (2023)
Ying He, Qinhu Zhang, Siguo Wang, Zhanheng Chen, Zhen Cui, Zhen-Hao Guo, De-Shuang Huang
Predicting the Sequence Specificities of DNA-Binding Proteins by DNA Fine-Tuned Language Model With Decaying Learning Rates. IEEE ACM Trans. Comput. Biol. Bioinform. 20 (1) (2023)
Zhen-Hao Guo, Yan Wu, Siguo Wang, Qinhu Zhang, Jin-Ming Shi, Yan-Bin Wang, Zhan-Heng Chen
scInterpreter: a knowledge-regularized generative model for interpretably integrating scRNA-seq data. BMC Bioinform. 24 (1) (2023)
Qinhu Zhang, Pengrui Teng, Siguo Wang, Ying He, Zhen Cui, Zhenghao Guo, Yixin Liu, Changan Yuan, Qi Liu, De-Shuang Huang
Computational prediction and characterization of cell-type-specific and shared binding sites. Bioinform. 39 (1) (2023)
Qinhu Zhang, Youhong Xu, Siguo Wang, Yong Wu, Yuannong Ye, Chang-An Yuan, Valeriya V. Gribova, Vladimir Fedorovich Filaretov, De-Shuang Huang
Using Fully Convolutional Network to Locate Transcription Factor Binding Sites Based on DNA Sequence and Conservation Information. IEEE ACM Trans. Comput. Biol. Bioinform. 20 (5) (2023)
Zhen Cui, Siguo Wang, Ying He, Zhan-Heng Chen, Qinhu Zhang
DeepTPpred: A Deep Learning Approach With Matrix Factorization for Predicting Therapeutic Peptides by Integrating Length Information. IEEE J. Biomed. Health Informatics 27 (9) (2023)
Siguo Wang, Qinhu Zhang, Ying He, Zhen Cui, Zhen-Hao Guo, Kyungsook Han, De-Shuang Huang
DLoopCaller: A deep learning approach for predicting genome-wide chromatin loops by integrating accessible chromatin landscapes. PLoS Comput. Biol. 18 (10) (2022)
Qinhu Zhang, Ying He, Siguo Wang, Zhanheng Chen, Zhen-Hao Guo, Zhen Cui, Qi Liu, De-Shuang Huang
Base-resolution prediction of transcription factor binding signals by a deep learning framework. PLoS Comput. Biol. 18 (3) (2022)
Qinhu Zhang, Yindong Zhang, Siguo Wang, Zhan-Heng Chen, Valeriya V. Gribova, Vladimir Fedorovich Filaretov, De-Shuang Huang
Predicting In-Vitro DNA-Protein Binding With a Spatially Aligned Fusion of Sequence and Shape. IEEE ACM Trans. Comput. Biol. Bioinform. 19 (6) (2022)
Siguo Wang, Ying He, Zhanheng Chen, Qinhu Zhang
FCNGRU: Locating Transcription Factor Binding Sites by Combing Fully Convolutional Neural Network With Gated Recurrent Unit. IEEE J. Biomed. Health Informatics 26 (4) (2022)
Qinhu Zhang, Siguo Wang, Zhanheng Chen, Ying He, Qi Liu, De-Shuang Huang
Locating transcription factor binding sites by fully convolutional neural network. Briefings Bioinform. 22 (5) (2021)
Ying He, Zhen Shen, Qinhu Zhang, Siguo Wang, De-Shuang Huang
A survey on deep learning in DNA/RNA motif mining. Briefings Bioinform. 22 (4) (2021)
Ying He, Zhen Shen, Qinhu Zhang, Siguo Wang, Changan Yuan, Xiao Qin, Hongjie Wu, Xingming Zhao
Three-Layer Dynamic Transfer Learning Language Model for E. Coli Promoter Classification. ICIC (2) (2020)
Siguo Wang, Zhen Shen, Ying He, Qinhu Zhang, Changan Yuan, Xiao Qin, Hongjie Wu, Xingming Zhao
A New Method Combining DNA Shape Features to Improve the Prediction Accuracy of Transcription Factor Binding Sites. ICIC (2) (2020)
Xiujuan Lei, Siguo Wang, Linqiang Pan
Identifying Essential Proteins in Dynamic PPI Network with Improved FOA. Int. J. Comput. Commun. Control 13 (3) (2018)
Xiujuan Lei, Siguo Wang, Linqiang Pan
Predicting Essential Proteins Based on Gene Expression Data, Subcellular Localization and PPI Data. BIC-TA (2017)