Predicting In-Vitro DNA-Protein Binding With a Spatially Aligned Fusion of Sequence and Shape.
Qinhu ZhangYindong ZhangSiguo WangZhan-Heng ChenValeriya V. GribovaVladimir Fedorovich FilaretovDe-Shuang HuangPublished in: IEEE ACM Trans. Comput. Biol. Bioinform. (2022)
Keyphrases
- sequence analysis
- transcription factor binding sites
- dna binding
- sequence databases
- genomic sequences
- genome sequences
- protein sequences
- dna sequences
- protein coding regions
- binding sites
- sequence data
- biological sequences
- sequence alignment
- hiv protease
- shape model
- psi blast
- rna sequences
- shape analysis
- computational biology
- information fusion
- data fusion
- cis regulatory
- shape descriptors
- dna computing
- influenza virus
- sequence similarity
- similarity search
- genome wide
- fusion method
- multiple sequence alignment
- motif discovery
- protein families
- protein structure
- transcription factors
- amino acids
- regulatory elements
- nucleotide sequences
- predicting protein
- coding regions
- gene expression
- secondary structure
- sequential pattern mining