Xiujuan Lei

ORCID

Publication Activity (10 Years)

Years Active: 2007-2024
Publications (10 Years): 102

Top Venues

IEEE ACM Trans. Comput. Biol. Bioinform.

Knowl. Based Syst.

ICSI (1)

BIBM

Publications

Ming Chen, Zitao Hu, Xiujuan Lei, Chunyan Ji, Zhao Tong, Yi Pan
Multi-filter Based Signed Graph Convolutional Networks for Predicting Interactions on Drug Networks. ISBRA (2) (2024)
Julong Li, Jianrui Chen, Zhihui Wang, Xiujuan Lei
HoRDA: Learning higher-order structure information for predicting RNA-disease associations. Artif. Intell. Medicine 148 (2024)
Shi Cheng, Xueping Wang, Mingming Zhang, Xiujuan Lei, Hui Lu, Yuhui Shi
Solving multimodal optimization problems by a knowledge-driven brain storm optimization algorithm. Appl. Soft Comput. 150 (2024)
Shi Cheng, Hui Lu, Xiujuan Lei
Automated Planning and Scheduling with Swarm Intelligence. ICSI (2024)
Mei Ma, Xiujuan Lei
A deep learning framework for predicting molecular property based on multi-type features fusion. Comput. Biol. Medicine 169 (2024)
Ming Fang, Minghan Fu, Bo Liao, Xiujuan Lei, Fang-Xiang Wu
Deep integrated fusion of local and global features for cervical cell classification. Comput. Biol. Medicine 171 (2024)
Zhongyin Xu, Xiujuan Lei, Mei Ma, Yi Pan
Molecular Generation and Optimization of Molecular Properties Using a Transformer Model. Big Data Min. Anal. 7 (1) (2024)
Yueyue Wang, Xiujuan Lei, Yi Pan
Microbe-Disease Association Prediction Using RGCN Through Microbe-Drug-Disease Network. IEEE ACM Trans. Comput. Biol. Bioinform. 20 (6) (2023)
Jianping Liu, Xiujuan Lei, Yuchen Zhang, Yi Pan
The prediction of molecular toxicity based on BiGRU and GraphSAGE. Comput. Biol. Medicine 153 (2023)
Mei Ma, Xiujuan Lei
A dual graph neural network for drug-drug interactions prediction based on molecular structure and interactions. PLoS Comput. Biol. 19 (1) (2023)
Yulian Ding, Xiujuan Lei, Bo Liao, Fang-Xiang Wu
Biomarker Identification via a Factorization Machine-Based Neural Network With Binary Pairwise Encoding. IEEE ACM Trans. Comput. Biol. Bioinform. 20 (3) (2023)
Lian Liu, Yumeng Zhou, Xiujuan Lei
RMDGCN: Prediction of RNA methylation and disease associations based on graph convolutional network with attention mechanism. PLoS Comput. Biol. 19 (12) (2023)
Yuchen Zhang, Xiujuan Lei, Cai Dai, Yi Pan, Fang-Xiang Wu
Identify potential circRNA-disease associations through a multi-objective evolutionary algorithm. Inf. Sci. 647 (2023)
Yajing Guo, Xiujuan Lei, Lian Liu, Yi Pan
circ2CBA: prediction of circRNA-RBP binding sites combining deep learning and attention mechanism. Frontiers Comput. Sci. 17 (5) (2023)
Cai Dai, Cheng Peng, Xiujuan Lei
A point crowding-degree based evolutionary algorithm for many-objective optimization. Memetic Comput. 15 (4) (2023)
Yueyue Wang, Xiujuan Lei, Cheng Lu, Yi Pan
Predicting Microbe-Disease Association Based on Multiple Similarities and LINE Algorithm. IEEE ACM Trans. Comput. Biol. Bioinform. 19 (4) (2022)
Fei Wang, Xiujuan Lei, Bo Liao, Fang-Xiang Wu
Predicting drug-drug interactions by graph convolutional network with multi-kernel. Briefings Bioinform. 23 (1) (2022)
Xiujuan Lei, Jiaojiao Tie, Yi Pan
Inferring Metabolite-Disease Association Using Graph Convolutional Networks. IEEE ACM Trans. Comput. Biol. Bioinform. 19 (2) (2022)
Yulian Ding, Xiujuan Lei, Bo Liao, Fang-Xiang Wu
MLRDFM: a multi-view Laplacian regularized DeepFM model for predicting miRNA-disease associations. Briefings Bioinform. 23 (3) (2022)
Chunyan Fan, Xiujuan Lei, Jiaojiao Tie, Yuchen Zhang, Fang-Xiang Wu, Yi Pan
CircR2Disease v2.0: An Updated Web Server for Experimentally Validated circRNA-disease Associations and Its Application. Genom. Proteom. Bioinform. 20 (3) (2022)
Fei Wang, Yulian Ding, Xiujuan Lei, Bo Liao, Fang-Xiang Wu
Identifying Gene Signatures for Cancer Drug Repositioning Based on Sample Clustering. IEEE ACM Trans. Comput. Biol. Bioinform. 19 (2) (2022)
Ali Ghulam, Xiujuan Lei, Yuchen Zhang, Zhenqiang Wu
Human drug-pathway association prediction based on network consistency projection. Comput. Biol. Chem. 97 (2022)
Yulian Ding, Xiujuan Lei, Bo Liao, Fang-Xiang Wu
Predicting miRNA-Disease Associations Based On Multi-View Variational Graph Auto-Encoder With Matrix Factorization. IEEE J. Biomed. Health Informatics 26 (1) (2022)
Wanpeng Zhu, Xiujuan Lei
COVID-19 Detection Method Based on Attentional Mechanism and LSTM. ICSI (2) (2022)
Ming Fang, Xiujuan Lei, Bo Liao, Fang-Xiang Wu
A Deep Neural Network for Cervical Cell Classification Based on Cytology Images. IEEE Access 10 (2022)
Shi Cheng, Lianbo Ma, Hui Lu, Xiujuan Lei, Yuhui Shi
Evolutionary computation for solving search-based data analytics problems. Artif. Intell. Rev. 54 (2) (2021)
Xiujuan Lei, Wenxiang Zhang
Logistic regression algorithm to identify candidate disease genes based on reliable protein-protein interaction network. Sci. China Inf. Sci. 64 (7) (2021)
Zhengfeng Wang, Xiujuan Lei
Prediction of RBP binding sites on circRNAs using an LSTM-based deep sequence learning architecture. Briefings Bioinform. 22 (6) (2021)
Xiujuan Lei, Thosini Bamunu Mudiyanselage, Yuchen Zhang, Chen Bian, Wei Lan, Ning Yu, Yi Pan
A comprehensive survey on computational methods of non-coding RNA and disease association prediction. Briefings Bioinform. 22 (4) (2021)
Hongming Xu, Lina Liu, Xiujuan Lei, Mrinal Mandal, Cheng Lu
An unsupervised method for histological image segmentation based on tissue cluster level graph cut. Comput. Medical Imaging Graph. 93 (2021)
Fei Wang, Yulian Ding, Xiujuan Lei, Bo Liao, Fang-Xiang Wu
Human Protein Complex-Based Drug Signatures for Personalized Cancer Medicine. IEEE J. Biomed. Health Informatics 25 (11) (2021)
Yueyue Wang, Xiujuan Lei, Yi Pan
Predicting Microbe-Disease Association via Tripartite Network and Relation Graph Convolutional Network. ISBRA (2021)
Zhengfeng Wang, Xiujuan Lei
Identifying the sequence specificities of circRNA-binding proteins based on a capsule network architecture. BMC Bioinform. 22 (1) (2021)
Xiujuan Lei, Chen Bian, Yi Pan
Predicting CircRNA-Disease Associations Based on Improved Weighted Biased Meta-Structure. J. Comput. Sci. Technol. 36 (2) (2021)
Jing Yang, Xiujuan Lei
Predicting circRNA-disease associations based on autoencoder and graph embedding. Inf. Sci. 571 (2021)
Yuchen Zhang, Xiujuan Lei, Yi Pan, Witold Pedrycz
Prediction of disease-associated circRNAs via circRNA-disease pair graph and weighted nuclear norm minimization. Knowl. Based Syst. 214 (2021)
Thosini Bamunu Mudiyanselage, Xiujuan Lei, Nipuna Senanayake, Yanqing Zhang, Yi Pan
Graph Convolution Networks Using Message Passing and Multi-Source Similarity Features for Predicting circRNA-Disease Association. CoRR (2020)
Xiujuan Lei, Xiaoqin Yang, Fang-Xiang Wu
Artificial Fish Swarm Optimization Based Method to Identify Essential Proteins. IEEE ACM Trans. Comput. Biol. Bioinform. 17 (2) (2020)
Ali Ghulam, Xiujuan Lei, Min Guo, Chen Bian
Disease-Pathway Association Prediction Based on Random Walks With Restart and PageRank. IEEE Access 8 (2020)
Yulian Ding, Bolin Chen, Xiujuan Lei, Bo Liao, Fang-Xiang Wu
Predicting novel CircRNA-disease associations based on random walk and logistic regression model. Comput. Biol. Chem. 87 (2020)
Cai Dai, Xiujuan Lei, Xiaoguang He
A decomposition-based evolutionary algorithm with adaptive weight adjustment for many-objective problems. Soft Comput. 24 (14) (2020)
Lian Liu, Xiujuan Lei, Jia Meng, Zhen Wei
A RNA Methylation Sites. IEEE Access 8 (2020)
Xiujuan Lei, Cheng Zhang
Predicting Metabolite-Disease Associations Based on Linear Neighborhood Similarity with Improved Bipartite Network Projection Algorithm. Complex. 2020 (2020)
Yuchen Zhang, Xiujuan Lei, Zengqiang Fang, Yi Pan
CircRNA-disease associations prediction based on metapath2vec++ and matrix factorization. Big Data Min. Anal. 3 (4) (2020)
Chunyan Fan, Xiujuan Lei, Ying Tan
Inferring Candidate CircRNA-Disease Associations by Bi-random Walk Based on CircRNA Regulatory Similarity. ICSI (2020)
Thosini Bamunu Mudiyanselage, Xiujuan Lei, Nipuna Senanayake, Yanqing Zhang, Yi Pan
Graph Convolution Networks Using Message Passing and Multi-Source Similarity Features for Predicting circRNA-Disease Association. BIBM (2020)
Yingxia Sun, Xuan Wang, Junliang Shang, Jin-Xing Liu, Chun-Hou Zheng, Xiujuan Lei
Introducing Heuristic Information Into Ant Colony Optimization Algorithm for Identifying Epistasis. IEEE ACM Trans. Comput. Biol. Bioinform. 17 (4) (2020)
Ali Ghualm, Xiujuan Lei, Yuchen Zhang, Shi Cheng, Min Guo
Identification of Pathway-Specific Protein Domain by Incorporating Hyperparameter Optimization Based on 2D Convolutional Neural Network. IEEE Access 8 (2020)
Zhengfeng Wang, Xiujuan Lei
Matrix factorization with neural network for predicting circRNA-RBP interactions. BMC Bioinform. 21 (1) (2020)
Xiujuan Lei, Jiaojiao Tie, Hamido Fujita
Relational completion based non-negative matrix factorization for predicting metabolite-disease associations. Knowl. Based Syst. 204 (2020)
Xiujuan Lei, Cheng Zhang
Predicting metabolite-disease associations based on KATZ model. BioData Min. 12 (1) (2019)
Wenxiang Zhang, Xiujuan Lei, Chen Bian
Identifying Cancer genes by combining two-rounds RWR based on multiple biological data. BMC Bioinform. (18) (2019)
Fei Wang, Xiujuan Lei, Bo Liao, Fang-Xiang Wu
Human Protein Complex Signatures for Drug Repositioning. BCB (2019)
Xiujuan Lei, Xiaoqin Yang, Hamido Fujita
Random walk based method to identify essential proteins by integrating network topology and biological characteristics. Knowl. Based Syst. 167 (2019)
Chunyan Fan, Xiujuan Lei, Ling Guo, Aidong Zhang
Predicting the associations between microbes and diseases by integrating multiple data sources and path-based HeteSim scores. Neurocomputing 323 (2019)
Xiaoqin Yang, Xiujuan Lei, Jiayin Wang
Essential Protein Detection from Protein-Protein Interaction Networks Using Immune Algorithm. IWBBIO (1) (2019)
Hai Liu, Zhenqiang Wu, Changgen Peng, Xiujuan Lei, Feng Tian, Laifeng Lu
Adaptive Differential Privacy of Character and Its Application for Genome Data Sharing. NaNA (2019)
Shi Cheng, Xiujuan Lei, Hui Lu, Yong Zhang, Yuhui Shi
Generalized pigeon-inspired optimization algorithms. Sci. China Inf. Sci. 62 (7) (2019)
Yuchen Zhang, Xiujuan Lei, Shi Cheng
PDG-PIO: Predicting Disease-genes Based on Pigeon-inspired Optimization. CEC (2019)
Xiujuan Lei, Ming Fang, Ling Guo, Fang-Xiang Wu
Protein complex detection based on flower pollination mechanism in multi-relation reconstructed dynamic protein networks. BMC Bioinform. (3) (2019)
Jie Zhao, Xiujuan Lei, Xiaoqin Yang, Ling Guo
A New Method for Identification of Essential Proteins by Information Entropy of Protein Complex and Subcellular Localization. ICSI (2) (2019)
Cai Dai, Xiujuan Lei
A Multiobjective Brain Storm Optimization Algorithm Based on Decomposition. Complex. 2019 (2019)
Xiujuan Lei, Ming Fang, Hamido Fujita
Moth-flame optimization-based algorithm with synthetic dynamic PPI networks for discovering protein complexes. Knowl. Based Syst. 172 (2019)
Zengqiang Fang, Xiujuan Lei
Prediction of miRNA-circRNA associations based on k-NN multi-label with random walk restart on a heterogeneous network. Big Data Min. Anal. 2 (4) (2019)
Xiujuan Lei, Jing Liang, Ling Guo
Identify protein complexes based on PageRank algorithm and architecture on dynamic PPI networks. Int. J. Data Min. Bioinform. 22 (4) (2019)
Jie Zhao, Xiujuan Lei
Predicting Essential Proteins Based on Second-Order Neighborhood Information and Information Entropy. IEEE Access 7 (2019)
Xiujuan Lei, Wenxiang Zhang
BRWSP: Predicting circRNA-Disease Associations Based on Biased Random Walk to Search Paths on a Multiple Heterogeneous Network. Complex. 2019 (2019)
Shi Cheng, Hui Lu, Yi-Nan Guo, Xiujuan Lei, Jing Liang, Junfeng Chen, Yuhui Shi
Dynamic Multimodal Optimization: A Preliminary Study. CEC (2019)
Xiujuan Lei, Yuchen Zhang
Predicting disease-genes based on network information loss and protein complexes in heterogeneous network. Inf. Sci. 479 (2019)
Jie Zhao, Xiujuan Lei
Detecting overlapping protein complexes in weighted PPI network based on overlay network chain in quotient space. BMC Bioinform. (25) (2019)
Wenxiang Zhang, Xiujuan Lei
Two-step Random Walk Algorithm to Identify Cancer Genes Based on Various Biological Data. BIBM (2018)
Cai Dai, Xiaoqi Shi, Xiujuan Lei, Wei Yue
An Adaptive Decomposition-based Multi-objective Evolutionary Algorithm for Fuzzy Portfolio Selection. J. Inf. Hiding Multim. Signal Process. 9 (5) (2018)
Jie Zhao, Xiujuan Lei
Mining Overlapping Protein Complexes in PPI Network Based on Granular Computation in Quotient Space. ICIC (1) (2018)
Xiujuan Lei, Yuchen Zhang, Shi Cheng, Fang-Xiang Wu, Witold Pedrycz
Topology potential based seed-growth method to identify protein complexes on dynamic PPI data. Inf. Sci. 425 (2018)
Xiujuan Lei, Jie Zhao, Hamido Fujita, Aidong Zhang
Predicting essential proteins based on RNA-Seq, subcellular localization and GO annotation datasets. Knowl. Based Syst. 151 (2018)
Xiujuan Lei, Ming Fang, Fang-Xiang Wu, Luonan Chen
Improved flower pollination algorithm for identifying essential proteins. BMC Syst. Biol. 12 (4) (2018)
Shi Cheng, Junfeng Chen, Xiujuan Lei, Yuhui Shi
Locating Multiple Optima via Brain Storm Optimization Algorithms. IEEE Access 6 (2018)
Jing Liang, Xiujuan Lei, Ling Guo, Ying Tan
ACO Based Core-Attachment Method to Detect Protein Complexes in Dynamic PPI Networks. ICSI (1) (2018)
Chunyan Fan, Xiujuan Lei, Zengqiang Fang, Qinghua Jiang, Fang-Xiang Wu
CircR2Disease: a manually curated database for experimentally supported circular RNAs associated with various diseases. Database J. Biol. Databases Curation 2018 (2018)
Xiujuan Lei, Siguo Wang, Linqiang Pan
Identifying Essential Proteins in Dynamic PPI Network with Improved FOA. Int. J. Comput. Commun. Control 13 (3) (2018)
Cai Dai, Xiujuan Lei
A Decomposition-Based Multiobjective Evolutionary Algorithm with Adaptive Weight Adjustment. Complex. 2018 (2018)
Hai Liu, Zhenqiang Wu, Changgen Peng, Xiujuan Lei
Genomic Privacy Preserving Framework for High-Order SNPs Linkage Disequilibrium on Correlated Sequences. NaNA (2017)
Yuchen Zhang, Xiujuan Lei, Ying Tan
Firefly Clustering Method for Mining Protein Complexes. ICSI (1) (2017)
Cai Dai, Xiujuan Lei
An improvement decomposition-based multi-objective evolutionary algorithm with uniform design. Knowl. Based Syst. 125 (2017)
Cai Dai, Xiujuan Lei
An Improvement Based Evolutionary Algorithm with Adaptive Weight Adjustment for Many-Objective Optimization. CIS (2017)
Quande Qin, Shi Cheng, Xianghua Chu, Xiujuan Lei, Yuhui Shi
Solving non-convex/non-smooth economic load dispatch problems via an enhanced particle swarm optimization. Appl. Soft Comput. 59 (2017)
Shi Cheng, Xiujuan Lei, Junfeng Chen, Jiqiang Feng, Yuhui Shi
Normalized Ranking Based Particle Swarm Optimizer for Many Objective Optimization. SEAL (2017)
Shi Cheng, Yifei Sun, Junfeng Chen, Quande Qin, Xianghua Chu, Xiujuan Lei, Yuhui Shi
A comprehensive survey of brain storm optimization algorithms. CEC (2017)
Chunyan Fan, Xiujuan Lei
Genome-Wide Identification of Essential Proteins by Integrating RNA-seq, Subcellular Location and Complexes Information. ICIC (2) (2017)
Jie Zhao, Xiujuan Lei, Fang-Xiang Wu
Predicting Protein Complexes in Weighted Dynamic PPI Networks Based on ICSC. Complex. 2017 (2017)
Xiujuan Lei, Siguo Wang, Linqiang Pan
Predicting Essential Proteins Based on Gene Expression Data, Subcellular Localization and PPI Data. BIC-TA (2017)
Xiujuan Lei, Yuchen Zhang, Fang-Xiang Wu, Aidong Zhang
Mining protein complexes based on topology potential from weighted dynamic PPI network. BIBM (2016)
Cai Dai, Xiujuan Lei
A New Evolutionary Algorithm Based on Decomposition for Multi-Objective Optimization Problems. CIS (2016)
Cai Dai, Xiujuan Lei, Xiaofang Guo
A Novel Fitness Function Based on Decomposition for Multi-objective Optimization Problems. ICIC (2) (2016)
Xiujuan Lei, Huan Li, Fang-Xiang Wu
Detecting protein complexes from DPINs by OPTICS based on particle swarm optimization. BIBM (2016)
Cai Dai, Xiujuan Lei, Yulian Ding
A decomposition based evolutionary algorithm with uniform design for multi-objective optimization. CEC (2016)
Xiujuan Lei, Fei Wang, Fang-Xiang Wu, Aidong Zhang, Witold Pedrycz
Protein complex identification through Markov clustering with firefly algorithm on dynamic protein-protein interaction networks. Inf. Sci. 329 (2016)
Xiujuan Lei, Yulian Ding, Hamido Fujita, Aidong Zhang
Identification of dynamic protein complexes based on fruit fly optimization algorithm. Knowl. Based Syst. 105 (2016)
Jie Zhao, Xiujuan Lei, Fang-Xiang Wu
Identifying protein complexes in dynamic protein-protein interaction networks based on Cuckoo Search algorithm. BIBM (2016)
Yuchen Zhang, Xiujuan Lei, Ying Tan
Detecting Firefly Algorithm for Numerical Optimization. ICSI (1) (2016)

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Publication Activity (10 Years)

Top Topics

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Xiujuan Lei