Jia Meng

Publication Activity (10 Years)

Years Active: 2004-2023
Publications (10 Years): 49

Top Topics

Gene Expression

Functional Analysis

Top Venues

Nucleic Acids Res.

Publications

Sifan Song, Jinfeng Wang, Fengrui Cheng, Qirui Cao, Yihan Zuo, Yongteng Lei, Ruomai Yang, Chunxiao Yang, Frans Coenen, Jia Meng, Kang Dang, Jionglong Su
A Robust Framework of Chromosome Straightening With Vit-Patch Gan. ISBI (2023)
Yuxin Zhang, Jie Jiang, Jiongming Ma, Zhen Wei, Yue Wang, Bowen Song, Jia Meng, Guifang Jia, João Pedro de Magalhães, Daniel J. Rigden, Daiyun Hang, Kunqi Chen
DirectRMDB: a database of post-transcriptional RNA modifications unveiled from direct RNA sequencing technology. Nucleic Acids Res. 51 (D1) (2023)
Bowen Song, Xuan Wang, Zhanmin Liang, Jiongming Ma, Daiyun Huang, Yue Wang, João Pedro de Magalhães, Daniel J. Rigden, Jia Meng, Gang Liu, Kunqi Chen, Zhen Wei
RMDisease V2.0: an updated database of genetic variants that affect RNA modifications with disease and trait implication. Nucleic Acids Res. 51 (D1) (2023)
Zhiyi Chen, Yao Lu, Xinzhe Deng, Jia Meng, Shengchuan Zhang, Liujuan Cao
Self-Paced Partial Domain-Aware Learning for Face Anti-Spoofing. ICASSP (2023)
Xiaoliang Qian, Jia Meng, Wei Wang, Liying Jiang
Gradient adaptive sampling and multiple temporal scale 3D CNNs for tactile object recognition. Frontiers Neurorobotics 17 (2023)
Jia Meng, Zhang Ye
Study of adaptive clutter suppression method used for airborne forward-looking wind shear radar. Int. J. Wirel. Mob. Comput. 25 (3) (2023)
Yiyou Song, Yue Wang, Xuan Wang, Daiyun Huang, Anh Nguyen, Jia Meng
Multi-task adaptive pooling enabled synergetic learning of RNA modification across tissue, type and species from low-resolution epitranscriptomes. Briefings Bioinform. 24 (3) (2023)
Bowen Song, Daiyun Huang, Yuxin Zhang, Zhen Wei, Jionglong Su, João Pedro de Magalhães, Daniel J. Rigden, Jia Meng, Kunqi Chen
A-affecting Mutations in 23 Human Tissues. Genom. Proteom. Bioinform. 21 (4) (2023)
Dongheng Zhang, Jia Meng, Jian Zhang, Xinzhe Deng, Shouhong Ding, Man Zhou, Qian Wang, Qi Li, Yan Chen
SonarGuard: Ultrasonic Face Liveness Detection on Mobile Devices. IEEE Trans. Circuits Syst. Video Technol. 33 (8) (2023)
Jinfeng Wang, Qiming Huang, Feilong Tang, Jia Meng, Jionglong Su, Sifan Song
Stepwise Feature Fusion: Local Guides Global. MICCAI (3) (2022)
Shutao Chen, Lin Zhang, Lin Lu, Jia Meng, Hui Liu
FBCwPlaid: A Functional Biclustering Analysis of Epi-Transcriptome Profiling Data Via a Weighted Plaid Model. IEEE ACM Trans. Comput. Biol. Bioinform. 19 (3) (2022)
Jinfeng Wang, Qiming Huang, Feilong Tang, Jia Meng, Jionglong Su, Sifan Song
Stepwise Feature Fusion: Local Guides Global. CoRR (2022)
Sifan Song, Tianming Bai, Yanxin Zhao, Wenbo Zhang, Chunxiao Yang, Jia Meng, Fei Ma, Jionglong Su
A New Convolutional Neural Network Architecture for Automatic Segmentation of Overlapping Human Chromosomes. Neural Process. Lett. 54 (1) (2022)
Sifan Song, Jinfeng Wang, Fengrui Cheng, Qirui Cao, Yihan Zuo, Yongteng Lei, Ruomai Yang, Chunxiao Yang, Frans Coenen, Jia Meng, Kang Dang, Jionglong Su
A Robust Framework of Chromosome Straightening with ViT-Patch GAN. CoRR (2022)
Jiongming Ma, Bowen Song, Zhen Wei, Daiyun Huang, Yuxin Zhang, Jionglong Su, João Pedro de Magalhães, Daniel J. Rigden, Jia Meng, Kunqi Chen
m5C-Atlas: a comprehensive database for decoding and annotating the 5-methylcytosine (m5C) epitranscriptome. Nucleic Acids Res. 50 (D1) (2022)
Jian Zhang, Ying Tai, Taiping Yao, Jia Meng, Shouhong Ding, Chengjie Wang, Jilin Li, Feiyue Huang, Rongrong Ji
Aurora Guard: Reliable Face Anti-Spoofing via Mobile Lighting System. CoRR (2021)
Bowen Song, Kunqi Chen, Yujiao Tang, Zhen Wei, Jionglong Su, João Pedro de Magalhães, Daniel J. Rigden, Jia Meng
ConsRM: collection and large-scale prediction of the evolutionarily conserved RNA methylation sites, with implications for the functional epitranscriptome. Briefings Bioinform. 22 (6) (2021)
Yujiao Tang, Kunqi Chen, Bowen Song, Jiongming Ma, Xiangyu Wu, Qingru Xu, Zhen Wei, Jionglong Su, Gang Liu, Rong Rong, Zhiliang Lu, João Pedro de Magalhães, Daniel J. Rigden, Jia Meng
m6A-Atlas: a comprehensive knowledgebase for unraveling the N6-methyladenosine (m6A) epitranscriptome. Nucleic Acids Res. 49 (Database-Issue) (2021)
Daiyun Huang, Bowen Song, Jingjue Wei, Jionglong Su, Frans Coenen, Jia Meng
Weakly supervised learning of RNA modifications from low-resolution epitranscriptome data. Bioinform. 37 (Supplement) (2021)
Yuxin Zhang, Yuxuan Wu, Di Zhen, Kunqi Chen, Jia Meng
A Meta-analysis: Evaluating the Effect of METTL3/METTL14 on m6A Level Based on Knockdown Samples. BIBE (2021)
Kunqi Chen, Bowen Song, Yujiao Tang, Zhen Wei, Qingru Xu, Jionglong Su, João Pedro de Magalhães, Daniel J. Rigden, Jia Meng
RMDisease: a database of genetic variants that affect RNA modifications, with implications for epitranscriptome pathogenesis. Nucleic Acids Res. 49 (Database-Issue) (2021)
Yuxuan Wu, Yuxin Zhang, Ruoqi Wang, Jia Meng, Kunqi Chen, Yiyou Song, Daiyun Huang
Prediction of m6A Reader Substrate Sites Using Deep Convolutional and Recurrent Neural Network. BIBE (2021)
Song-Yao Zhang, Shaowu Zhang, Yujiao Tang, Xiaonan Fan, Jia Meng
Funm6AViewer: a web server and R package for functional analysis of context-specific m6A RNA methylation. Bioinform. 37 (22) (2021)
Qingru Xu, Xiangyu Wu, Jia Meng
Computational Prediction of N6-methyladenosine (m6A) RNA Methylation in SARS-CoV-2 Viral Transcripts. BIBE (2021)
Yue Wang, Kunqi Chen, Zhen Wei, Frans Coenen, Jionglong Su, Jia Meng
MetaTX: deciphering the distribution of mRNA-related features in the presence of isoform ambiguity, with applications in epitranscriptome analysis. Bioinform. 37 (9) (2021)
Sifan Song, Daiyun Huang, Yalun Hu, Chunxiao Yang, Jia Meng, Fei Ma, Jiaming Zhang, Jionglong Su
A Novel Application of Image-to-Image Translation: Chromosome Straightening Framework by Learning from a Single Image. CoRR (2021)
Daoyuan Chen, Qinyi Liu, Jia Meng, Jionglong Su
Gibbs Sampling Based Banoian Biclustering of Gene Expression Data. CISP-BMEI (2020)
Jinge Wu, Lihan Zhang, Yuanzhe Wang, Jia Meng, Jionglong Su, Yue Wang
An Improved Algorithm for Estimating the Distribution of RNA-related Genomic Features. BIBE (2020)
Lian Liu, Xiujuan Lei, Jia Meng, Zhen Wei
A RNA Methylation Sites. IEEE Access 8 (2020)
Lin Zhang, Shutao Chen, Jingyi Zhu, Jia Meng, Hui Liu
REW-ISA: unveiling local functional blocks in epi-transcriptome profiling data via an RNA expression-weighted iterative signature algorithm. BMC Bioinform. 21 (1) (2020)
Bowen Song, Yujiao Tang, Kunqi Chen, Zhen Wei, Rong Rong, Zhiliang Lu, Jionglong Su, João Pedro de Magalhães, Daniel J. Rigden, Jia Meng
m7GHub: deciphering the location, regulation and pathogenesis of internal mRNA N7-methylguanosine (m7G) sites in human. Bioinform. 36 (11) (2020)
Xiangyu Wu, Zhen Wei, Kunqi Chen, Qing Zhang, Jionglong Su, Hui Liu, Lin Zhang, Jia Meng
m6Acomet: large-scale functional prediction of individual m6A RNA methylation sites from an RNA co-methylation network. BMC Bioinform. 20 (1) (2019)
Song-Yao Zhang, Shaowu Zhang, Xiaonan Fan, Jia Meng, Yidong Chen, Shou-Jiang Gao, Yufei Huang
Global analysis of N6-methyladenosine functions and its disease association using deep learning and network-based methods. PLoS Comput. Biol. 15 (1) (2019)
Xing Chen, Ya-Zhou Sun, Hui Liu, Lin Zhang, Jian-Qiang Li, Jia Meng
RNA methylation and diseases: experimental results, databases, Web servers and computational models. Briefings Bioinform. 20 (3) (2019)
Song-Yao Zhang, Shao-Wu Zhang, Xiao-Nan Fan, Teng Zhang, Jia Meng, Yufei Huang
FunDMDeep-m6A: identification and prioritization of functional differential m6A methylation genes. Bioinform. 35 (14) (2019)
Shen Jia, Haochen Luo, Qiheng Gao, Jiaqi Guo, Jionglong Su, Jia Meng, Xiangyu Wu
Detection of m6A RNA Methylation in Nanopore Sequencing Data Using Support Vector Machine. CISP-BMEI (2019)
Teng Zhang, Shao-Wu Zhang, Lin Zhang, Jia Meng
trumpet: transcriptome-guided quality assessment of m6A-seq data. BMC Bioinform. 19 (1) (2018)
Songyao Zhang, Shaowu Zhang, Xiaonan Fan, Jia Meng, Yidong Chen, Yufei Huang
A Machine Learning Approach for Uncovering N6-methyladenosine-Disease Association. BCB (2018)
Hui Liu, Huaizhi Wang, Zhen Wei, Songyao Zhang, Gang Hua, Shao-Wu Zhang, Lin Zhang, Shou-Jiang Gao, Jia Meng, Xing Chen, Yufei Huang
MeT-DB V2.0: elucidating context-specific functions of N6-methyl-adenosine methyltranscriptome. Nucleic Acids Res. 46 (Database-Issue) (2018)
Xiaodong Cui, Lin Zhang, Jia Meng, Manjeet K. Rao, Yidong Chen, Yufei Huang
MeTDiff: A Novel Differential RNA Methylation Analysis for MeRIP-Seq Data. IEEE ACM Trans. Comput. Biol. Bioinform. 15 (2) (2018)
Jia Meng, Liang Cao, Huashan Yu
A Topology-Aware Framework for Graph Traversals. ICA3PP (2017)
Jia Meng, Liang Cao, Huashan Yu
A Topology-Adaptive Strategy for Graph Traversing. HPCS (2017)
Hongdong Wang, Jia Meng, Li Zou, Siyuan Luo, Yuanyuan Shi
Linguistic-valued lattice implication algebra TOPSIS method based on entropy weight method. ISKE (2017)
Yuanyuan Shi, Li Zou, Yingying Xu, Siyuan Luo, Jia Meng
Linguistic Truth-Valued Multi-Attribute Decision Making Approach Based on TOPSIS. IDEAL (2017)
Lian Liu, Shao-Wu Zhang, Yufei Huang, Jia Meng
QNB: differential RNA methylation analysis for count-based small-sample sequencing data with a quad-negative binomial model. BMC Bioinform. 18 (1) (2017)
Lin Zhang, Hui Liu, Yufei Huang, Xuesong Wang, Yidong Chen, Jia Meng
Cancer Progression Prediction Using Gene Interaction Regularized Elastic Net. IEEE ACM Trans. Comput. Biol. Bioinform. 14 (1) (2017)
Song-Yao Zhang, Shao-Wu Zhang, Lian Liu, Jia Meng, Yufei Huang
m6A-Driver: Identifying Context-Specific mRNA m6A Methylation-Driven Gene Interaction Networks. PLoS Comput. Biol. 12 (12) (2016)
Xiaodong Cui, Jia Meng, Shaowu Zhang, Yidong Chen, Yufei Huang
A peaks by modeling biological variances in MeRIP-seq data. Bioinform. 32 (12) (2016)
Lin Xiao, Jia Meng, Shifei Ding, Li Zou
A resolution method for linguistic truth-valued intuitionistic fuzzy first-order logic. FUZZ-IEEE (2016)
Xiaodong Cui, Zhen Wei, Lin Zhang, Hui Liu, Lei Sun, Shaowu Zhang, Yufei Huang, Jia Meng
Sketching the distribution of transcriptomic features on RNA transcripts with Travis coordinates. BIBM (2015)
Xiaodong Cui, Jia Meng, Shaowu Zhang, Yufei Huang
Modeling of replicates variances for detecting RNA methylation site in MERIP-SEQ data. ChinaSIP (2015)
Hui Liu, Mario A. Flores, Jia Meng, Lin Zhang, Xinyu Zhao, Manjeet K. Rao, Yidong Chen, Yufei Huang
MeT-DB: a database of transcriptome methylation in mammalian cells. Nucleic Acids Res. 43 (Database-Issue) (2015)
Lin Zhang, Jia Meng, Hui Liu, Xiaodong Cui, Shao-Wu Zhang, Yidong Chen, Yufei Huang
Detecting differentially methylated mRNA from MeRIP-Seq with likelihood ratio test. GlobalSIP (2014)
Yu-Chen Zhang, Shao-Wu Zhang, Lian Liu, Lin Zhang, Hui Liu, Xiaodong Cui, Yufei Huang, Jia Meng
Differential analysis of RNA methylome with improved spatial resolution. GlobalSIP (2014)
Jia Meng, Lenis Mauricio Merino, Kay Robbins, Yufei Huang
Classification of Imperfectly Time-Locked Image RSVP Events with EEG Device. Neuroinformatics 12 (2) (2014)
Lenis Mauricio Merino, Jia Meng, Stephen M. Gordon, Brent J. Lance, Tony Johnson, Victor Paul, Kay Robbins, Jean M. Vettel, Yufei Huang
A bag-of-words model for task-load prediction from EEG in complex environments. ICASSP (2013)
Jia Meng, Xiaodong Cui, Manjeet K. Rao, Yidong Chen, Yufei Huang
Exome-based analysis for RNA epigenome sequencing data. Bioinform. 29 (12) (2013)
Xingyu Qian, Hao Wu, Jia Meng
A Dual-Antenna and Mobile Relay Station Based Handover in Distributed Antenna System for High-Speed Railway. IMIS (2013)
Xiaodong Cui, Jia Meng, Manjeet K. Rao, Yidong Chen, Yufei Huang
Differential analysis of rna methylation sequencing data. GlobalSIP (2013)
Shaheen Ahmed, Lenis Mauricio Merino, Zijing Mao, Jia Meng, Kay Robbins, Yufei Huang
A Deep Learning method for classification of images RSVP events with EEG data. GlobalSIP (2013)
Xiaodong Cui, Jia Meng, Manjeet K. Rao, Yidong Chen, Yufei Huang
An HMM-based Exome Peak-finding package for RNA epigenome sequencing data. GENSiPS (2013)
Jia Meng, Xiaodong Cui, Hui Liu, Lin Zhang, Shaowu Zhang, Manjeet K. Rao, Yidong Chen, Yufei Huang
Unveiling the dynamics in RNA epigenetic regulations. BIBM (2013)
Jia Meng, Hao Wu, Hengliang Tang, Xingyu Qian
An Adaptive Strategy for Location-Aided Routing Protocol in Vehicular Ad Hoc Networks. IMIS (2013)
Lin Zhang, Hui Liu, Jia Meng, Xuesong Wang, Yidong Chen, Yufei Huang
Integration of gene expression, genome wide DNA methylation, and gene networks for clinical outcome prediction in ovarian cancer. BIBM (2013)
Manuel Sanchez-Castillo, Jia Meng, Isabel M. Tienda-Luna, Yufei Huang
Basis-expansion factor models for uncovering transcription factor regulatory network. SSP (2012)
Dong Yue, Jia Meng, Mingzhu Lu, C. L. Philip Chen, Maozu Guo, Yufei Huang
Understanding MicroRNA Regulation: A computational perspective. IEEE Signal Process. Mag. 29 (1) (2012)
Jia Meng, Lenis Mauricio Merino, Kay Robbins, Yufei Huang
Exploiting correlated discriminant features in time frequency and space for characterization and robust classification of image RSVP events with EEG data. SSP (2012)
Jia Meng, Lenis Mauricio Merino, Kay Robbins, Yufei Huang
Classification of EEG recordings without perfectly time-locked events. SSP (2012)
Jia Meng, Hung-I Harry Chen, Jianqiu Zhang, Yidong Chen, Yufei Huang
Uncover cooperative gene regulations by microRNAs and transcription factors in glioblastoma using a nonnegative hybrid factor model. ICASSP (2011)
Lin Zhang, Jia Meng, Hui Liu, Yufei Huang
Clustering DNA methylation expressions using nonparametric beta mixture model. GENSiPS (2011)
Jia Meng, Jianqiu Zhang, Yidong Chen, Yufei Huang
An iterated conditional mode solution for Bayesian factor modeling of transcriptional regulatory networks. GENSiPS (2010)
Jia Meng, Jianqiu (Michelle) Zhang, Yuan (Alan) Qi, Yidong Chen, Yufei Huang
Uncovering Transcriptional Regulatory Networks by Sparse Bayesian Factor Model. EURASIP J. Adv. Signal Process. 2010 (2010)
Jia Meng, Jianqiu Zhang, Yidong Chen, Yufei Huang
An Iterated Conditional Modes solution for sparse Bayesian factor modeling of transcriptional regulatory networks. BIBM (2010)
Jia Meng, Shou-Jiang Gao, Yufei Huang
Enrichment constrained time-dependent clustering analysis for finding meaningful temporal transcription modules. Bioinform. 25 (12) (2009)
Jia Meng, Lawrence C. Paulson
Lightweight relevance filtering for machine-generated resolution problems. J. Appl. Log. 7 (1) (2009)
Jia Meng, Lawrence C. Paulson
Translating Higher-Order Clauses to First-Order Clauses. J. Autom. Reason. 40 (1) (2008)
Jia Meng, Lawrence C. Paulson, Gerwin Klein
A Termination Checker for Isabelle Hoare Logic. VERIFY (2007)
Hans de Nivelle, Jia Meng
Geometric Resolution: A Proof Procedure Based on Finite Model Search. IJCAR (2006)
Jia Meng, Claire Quigley, Lawrence C. Paulson
Automation for interactive proof: First prototype. Inf. Comput. 204 (10) (2006)
Jia Meng, Claire Quigley, Lawrence C. Paulson
Erratum to "Automation for interactive proof: First prototype" [Inform. and Comput. 204(2006) 1575-1596]. Inf. Comput. 204 (12) (2006)
Jia Meng, Lawrence C. Paulson
Experiments on Supporting Interactive Proof Using Resolution. IJCAR (2004)