Yufei Huang

ORCID

Publication Activity (10 Years)

Years Active: 2000-2024
Publications (10 Years): 124

Top Venues

Publications

Li-Ju Wang, Michael Ning, Tapsya Nayak, Michael J. Kasper, Satdarshan P. Monga, Yufei Huang, Yidong Chen, Yu-Chiao Chiu
shinyDeepDR: A user-friendly R Shiny app for predicting anti-cancer drug response using deep learning. Patterns 5 (2) (2024)
Lirong Wu, Yufei Huang, Cheng Tan, Zhangyang Gao, Bozhen Hu, Haitao Lin, Zicheng Liu, Stan Z. Li
PSC-CPI: Multi-Scale Protein Sequence-Structure Contrasting for Efficient and Generalizable Compound-Protein Interaction Prediction. CoRR (2024)
Puyu Li, Xinyi Zhou, Ningdi Luo, Ruinan Shen, Xue Zhu, Min Zhong, Sijia Huang, Naying He, Haiying Lyu, Yufei Huang, Qianyi Yin, Liche Zhou, Yong Lu, Yuyan Tan, Jun Liu
Distinct patterns of electrophysiologic-neuroimaging correlations between Parkinson's disease and multiple system atrophy. NeuroImage 297 (2024)
Ruixin Ding, Bowei Chen, James M. Wilson, Zhi Yan, Yufei Huang
SRNI-CAR: A comprehensive dataset for analyzing the Chinese automotive market. CoRR (2024)
Yufei Huang, Deyi Xiong
CBBQ: A Chinese Bias Benchmark Dataset Curated with Human-AI Collaboration for Large Language Models. CoRR (2023)
Yufei Huang, Lirong Wu, Haitao Lin, Jiangbin Zheng, Ge Wang, Stan Z. Li
Data-Efficient Protein 3D Geometric Pretraining via Refinement of Diffused Protein Structure Decoy. CoRR (2023)
Jiangbin Zheng, Siyuan Li, Yufei Huang, Zhangyang Gao, Cheng Tan, Bozhen Hu, Jun Xia, Ge Wang, Stan Z. Li
MMDesign: Multi-Modality Transfer Learning for Generative Protein Design. CoRR (2023)
Lirong Wu, Haitao Lin, Yufei Huang, Tianyu Fan, Stan Z. Li
Extracting Low-/High- Frequency Knowledge from Graph Neural Networks and Injecting it into MLPs: An Effective GNN-to-MLP Distillation Framework. CoRR (2023)
Zishan Guo, Renren Jin, Chuang Liu, Yufei Huang, Dan Shi, Supryadi, Linhao Yu, Yan Liu, Jiaxuan Li, Bojian Xiong, Deyi Xiong
Evaluating Large Language Models: A Comprehensive Survey. CoRR (2023)
Yujia Qin, Shengding Hu, Yankai Lin, Weize Chen, Ning Ding, Ganqu Cui, Zheni Zeng, Yufei Huang, Chaojun Xiao, Chi Han, Yi Ren Fung, Yusheng Su, Huadong Wang, Cheng Qian, Runchu Tian, Kunlun Zhu, Shihao Liang, Xingyu Shen, Bokai Xu, Zhen Zhang, Yining Ye, Bowen Li, Ziwei Tang, Jing Yi, Yuzhang Zhu, Zhenning Dai, Lan Yan, Xin Cong, Yaxi Lu, Weilin Zhao, Yuxiang Huang, Junxi Yan, Xu Han, Xian Sun, Dahai Li, Jason Phang, Cheng Yang, Tongshuang Wu, Heng Ji, Zhiyuan Liu, Maosong Sun
Tool Learning with Foundation Models. CoRR (2023)
Sonish Sivarajkumar, Yufei Huang, Yanshan Wang
Fair Patient Model: Mitigating Bias in the Patient Representation Learned from the Electronic Health Records. CoRR (2023)
Ruixin Ding, Bowei Chen, James M. Wilson, Zhi Yan, Yufei Huang
SRNI-CAR: A Comprehensive Dataset for Analyzing the Chinese Automotive Market. BigData (2023)
Lirong Wu, Haitao Lin, Yufei Huang, Tianyu Fan, Stan Z. Li
Extracting Low-/High- Frequency Knowledge from Graph Neural Networks and Injecting It into MLPs: An Effective GNN-to-MLP Distillation Framework. AAAI (2023)
Tianhao Shen, Renren Jin, Yufei Huang, Chuang Liu, Weilong Dong, Zishan Guo, Xinwei Wu, Yan Liu, Deyi Xiong
Large Language Model Alignment: A Survey. CoRR (2023)
Lirong Wu, Yufei Huang, Haitao Lin, Stan Z. Li
A Survey on Protein Representation Learning: Retrospect and Prospect. CoRR (2023)
Yufei Huang, Siyuan Li, Jin Su, Lirong Wu, Odin Zhang, Haitao Lin, Jingqi Qi, Zihan Liu, Zhangyang Gao, Yuyang Liu, Jiangbin Zheng, Stan. ZQ. Li
Protein 3D Graph Structure Learning for Robust Structure-based Protein Property Prediction. CoRR (2023)
Dahuan Wei, Bo Wang, Zhengjie Lu, Yufei Huang, Xinxin Li, Zhenfeng Huang, Hanling Mao
Iterative Rounded Transient-Synchrosqueezing- Extracting Transform and its Application. IEEE Trans. Ind. Electron. 70 (10) (2023)
Lirong Wu, Haitao Lin, Yufei Huang, Stan Z. Li
Quantifying the Knowledge in GNNs for Reliable Distillation into MLPs. CoRR (2023)
Xidong Wu, Wan-Yi Lin, Devin Willmott, Filipe Condessa, Yufei Huang, Zhenzhen Li, Madan Ravi Ganesh
Leveraging Foundation Models to Improve Lightweight Clients in Federated Learning. CoRR (2023)
Haitao Lin, Yufei Huang, Haotian Zhang, Lirong Wu, Siyuan Li, Zhiyuan Chen, Stan Z. Li
Functional-Group-Based Diffusion for Pocket-Specific Molecule Generation and Elaboration. CoRR (2023)
Sonish Sivarajkumar, Yufei Huang, Yanshan Wang
Fair patient model: Mitigating bias in the patient representation learned from the electronic health records. J. Biomed. Informatics 148 (2023)
Wenli Liao, Chengying Chen, Daifa Gao, Yufei Huang
A 10Gbps High-Speed Low-Noise Optical Receiver Based on CMOS 45nm Technology. ASICON (2023)
Hechao Liu, Yufei Huang
Sharp bounds on the symmetric division deg index of graphs and line graphs. Comput. Appl. Math. 42 (6) (2023)
Haitao Lin, Yufei Huang, Odin Zhang, Yunfan Liu, Lirong Wu, Siyuan Li, Zhiyuan Chen, Stan Z. Li
Functional-Group-Based Diffusion for Pocket-Specific Molecule Generation and Elaboration. NeurIPS (2023)
Lirong Wu, Haitao Lin, Yufei Huang, Stan Z. Li
Quantifying the Knowledge in GNNs for Reliable Distillation into MLPs. ICML (2023)
Jiangbin Zheng, Ge Wang, Yufei Huang, Bozhen Hu, Siyuan Li, Cheng Tan, Xinwen Fan, Stan Z. Li
Lightweight Contrastive Protein Structure-Sequence Transformation. CoRR (2023)
Yufei Huang, Mohsen A. Jafari
Risk-aware Vehicle Motion Planning Using Bayesian LSTM-Based Model Predictive Control. CoRR (2023)
Li You, Yufei Huang, Wen Zhong, Wenjin Wang, Xiqi Gao
Robust online energy efficiency optimization for distributed multi-cell massive MIMO networks. Sci. China Inf. Sci. 66 (3) (2023)
Mohammad Nur Nobi, Ram Krishnan, Yufei Huang, Ravi S. Sandhu
Administration of Machine Learning Based Access Control. ESORICS (2) (2022)
David Rodriguez, Tapsya Nayak, Yidong Chen, Ram Krishnan, Yufei Huang
On the role of deep learning model complexity in adversarial robustness for medical images. BMC Medical Informatics Decis. Mak. (2) (2022)
Jiangbin Zheng, Yile Wang, Ge Wang, Jun Xia, Yufei Huang, Guojiang Zhao, Yue Zhang, Stan Z. Li
Using Context-to-Vector with Graph Retrofitting to Improve Word Embeddings. CoRR (2022)
Haitao Lin, Lirong Wu, Yongjie Xu, Yufei Huang, Siyuan Li, Guojiang Zhao, Stan Z. Li
Non-equispaced Fourier Neural Solvers for PDEs. CoRR (2022)
Mario Flores, Zhentao Liu, Tinghe Zhang, Md Musaddaqui Hasib, Yu-Chiao Chiu, Zhenqing Ye, Karla Paniagua, Sumin Jo, Jianqiu Zhang, Shou-Jiang Gao, Yu-Fang Jin, Yidong Chen, Yufei Huang
Deep learning tackles single-cell analysis - a survey of deep learning for scRNA-seq analysis. Briefings Bioinform. 23 (1) (2022)
Yufei Huang, Mohsen Jafari, Peter Jin
Driving Safety Prediction and Safe Route Mapping Using In-vehicle and Roadside Data. CoRR (2022)
Yufei Huang, Yujia Qin, Huadong Wang, Yichun Yin, Maosong Sun, Zhiyuan Liu, Qun Liu
FPT: Improving Prompt Tuning Efficiency via Progressive Training. CoRR (2022)
Jiangbin Zheng, Yile Wang, Ge Wang, Jun Xia, Yufei Huang, Guojiang Zhao, Yue Zhang, Stan Z. Li
Using Context-to-Vector with Graph Retrofitting to Improve Word Embeddings. ACL (1) (2022)
Jinpeng Xu, Yufei Huang, Emmanouil Avgerinos, Gengzhong Feng, Feng Chu
Dual-channel competition: the role of quality improvement and price-matching. Int. J. Prod. Res. 60 (12) (2022)
Haitao Lin, Yufei Huang, Meng Liu, Xuanjing Li, Shuiwang Ji, Stan Z. Li
DiffBP: Generative Diffusion of 3D Molecules for Target Protein Binding. CoRR (2022)
Shan Jiang, Yufei Huang, Mohsen Jafari, Mohammad Jalayer
A Distributed Multi-Agent Reinforcement Learning With Graph Decomposition Approach for Large-Scale Adaptive Traffic Signal Control. IEEE Trans. Intell. Transp. Syst. 23 (9) (2022)
Yufei Huang, Yujia Qin, Huadong Wang, Yichun Yin, Maosong Sun, Zhiyuan Liu, Qun Liu
FPT: Improving Prompt Tuning Efficiency via Progressive Training. EMNLP (Findings) (2022)
Mohammad Nur Nobi, Ram Krishnan, Yufei Huang, Mehrnoosh Shakarami, Ravi S. Sandhu
Toward Deep Learning Based Access Control. CODASPY (2022)
Shan Jiang, Yufei Huang, Mohsen Jafari, Mohammad Jalayer
Economic-Driven Adaptive Traffic Signal Control. CoRR (2022)
Lirong Wu, Yufei Huang, Haitao Lin, Zicheng Liu, Tianyu Fan, Stan Z. Li
Automated Graph Self-supervised Learning via Multi-teacher Knowledge Distillation. CoRR (2022)
Mohammad Nur Nobi, Ram Krishnan, Yufei Huang, Mehrnoosh Shakarami, Ravi S. Sandhu
Toward Deep Learning Based Access Control. CoRR (2022)
Lirong Wu, Haitao Lin, Yufei Huang, Stan Z. Li
Knowledge Distillation Improves Graph Structure Augmentation for Graph Neural Networks. NeurIPS (2022)
Bozhen Hu, Jun Xia, Jiangbin Zheng, Cheng Tan, Yufei Huang, Yongjie Xu, Stan Z. Li
Protein Language Models and Structure Prediction: Connection and Progression. CoRR (2022)
Li You, Yufei Huang, Di Zhang, Zheng Chang, Wenjin Wang, Xiqi Gao
Energy Efficiency Optimization for Multi-Cell Massive MIMO: Centralized and Distributed Power Allocation Algorithms. IEEE Trans. Commun. 69 (8) (2021)
Arun Das, Jeffrey Mock, Yufei Huang, Edward J. Golob, Peyman Najafirad
Interpretable Self-Supervised Facial Micro-Expression Learning to Predict Cognitive State and Neurological Disorders. AAAI (2021)
Yufei Huang, Bo Hou, Wen Liu, Lidong Wu, Stephen Rainwater, Suogang Gao
On approximation algorithm for the edge metric dimension problem. Theor. Comput. Sci. 853 (2021)
Milad Mostavi, Yu-Chiao Chiu, Yidong Chen, Yufei Huang
CancerSiamese: one-shot learning for predicting primary and metastatic tumor types unseen during model training. BMC Bioinform. 22 (1) (2021)
John Heaps, Ram Krishnan, Yufei Huang, Jianwei Niu, Ravi S. Sandhu
Access Control Policy Generation from User Stories Using Machine Learning. DBSec (2021)
Li You, Yufei Huang, Di Zhang, Zheng Chang, Wenjin Wang, Xiqi Gao
Energy Efficiency Optimization for Multi-cell Massive MIMO: Centralized and Distributed Power Allocation Algorithms. CoRR (2021)
Joan Cahill, Vivienne Howard, Yufei Huang, Junchi Ye, Stephen Ralph, Aidan Dillon
Addressing Human Factors and Ethics in the Design of 'Future Work' and Intelligent Systems for Use in Financial Services - Person Centered Operations, Intelligent Work & the Triple Bottom Line. HCI (16) (2021)
Deming Ye, Yankai Lin, Yufei Huang, Maosong Sun
TR-BERT: Dynamic Token Reduction for Accelerating BERT Inference. NAACL-HLT (2021)
Xin Feng, Feng Chu, Chengbin Chu, Yufei Huang
Crowdsource-enabled integrated production and transportation scheduling for smart city logistics. Int. J. Prod. Res. 59 (7) (2021)
Weilin Zhang, Lihua You, Hechao Liu, Yufei Huang
The expected values and variances for Sombor indices in a general random chain. Appl. Math. Comput. 411 (2021)
Deming Ye, Yankai Lin, Yufei Huang, Maosong Sun
TR-BERT: Dynamic Token Reduction for Accelerating BERT Inference. CoRR (2021)
Joan Cahill, Vivienne Howard, Yufei Huang, Junchi Ye, Stephen Ralph, Aidan Dillon
Intelligent Work: Person Centered Operations, Worker Wellness and the Triple Bottom Line. HCI (39) (2021)
Li You, Jiayuan Xiong, Yufei Huang, Derrick Wing Kwan Ng, Cunhua Pan, Wenjin Wang, Xiqi Gao
Reconfigurable Intelligent Surfaces-Assisted Multiuser MIMO Uplink Transmission With Partial CSI. IEEE Trans. Wirel. Commun. 20 (9) (2021)
Li You, Jiayuan Xiong, Yufei Huang, Derrick Wing Kwan Ng, Cunhua Pan, Wenjin Wang, Xiqi Gao
Reconfigurable Intelligent Surfaces-Assisted Multiuser MIMO Uplink Transmission with Partial CSI. CoRR (2020)
Yufei Huang, Li You, Jiayuan Xiong, Wenjin Wang, Xiqi Gao
Max-Min Energy-Efficient Multi-Cell Massive MIMO Transmission Exploiting Statistical CSI. ICCC (2020)
Bowei Chen, JingMin Huang, Yufei Huang, Stefanos D. Kollias, Shigang Yue
Combining guaranteed and spot markets in display advertising: Selling guaranteed page views with stochastic demand. Eur. J. Oper. Res. 280 (3) (2020)
Bin Jiang, Linbo Qu, Yufei Huang, Yifei Zheng, Li You, Wenjin Wang
Energy Efficiency Optimization in Massive MIMO Secure Multicast Transmission. Entropy 22 (10) (2020)
Bin Jiang, Bowen Ren, Yufei Huang, Tingting Chen, Li You, Wenjin Wang
Energy Efficiency and Spectral Efficiency Tradeoff in Massive MIMO Multicast Transmission with Statistical CSI. Entropy 22 (9) (2020)
Chunyan Lu, Lin Li, Yifan Lei, Chunying Ren, Ying Su, Yufei Huang, Yu Chen, Shaohua Lei, Weiwei Fu
Coupling Coordination Relationship between Urban Sprawl and Urbanization Quality in the West Taiwan Strait Urban Agglomeration, China: Observation and Analysis from DMSP/OLS Nighttime Light Imagery and Panel Data. Remote. Sens. 12 (19) (2020)
Jiayuan Xiong, Li You, Yufei Huang, Derrick Wing Kwan Ng, Wenjin Wang, Xiqi Gao
Reconfigurable Intelligent Surfaces Assisted MIMO-MAC with Partial CSI. ICC (2020)
Lihua You, Lihong Deng, Yufei Huang
The maximum α-spectral radius and the majorization theorem of k-uniform supertrees. Discret. Appl. Math. 285 (2020)
Rifatul Islam, Yonggun Lee, Mehrad Jaloli, Imtiaz Muhammad, Dakai Zhu, Paul Rad, Yufei Huang, John Quarles
Automatic Detection and Prediction of Cybersickness Severity using Deep Neural Networks from user's Physiological Signals. ISMAR (2020)
Yu-Chiao Chiu, Hung-I Harry Chen, Aparna Gorthi, Milad Mostavi, Siyuan Zheng, Yufei Huang, Yidong Chen
Deep learning of pharmacogenomics resources: moving towards precision oncology. Briefings Bioinform. 21 (6) (2020)
Yufei Huang, Weihua He, Guixian Huang, Hong-Jian Lai, Sulin Song
A characterization of graphs with supereulerian line graphs. Int. J. Comput. Math. Comput. Syst. Theory 5 (1) (2020)
Xiangyu Lin, Dong Yan, Yufei Huang, Fan Bai, Xiongwen He, Panpan Zhan
Design of Spaceborne AIS System. WISATS (1) (2019)
Sharaj Panwar, Paul Rad, John Quarles, Edward J. Golob, Yufei Huang
A Semi-Supervised Wasserstein Generative Adversarial Network for Classifying Driving Fatigue from EEG signals. SMC (2019)
Yufei Huang, Ji Gao, Dan Wang, Yong Liu, Zhengji Song, Jia Xu, Lantao Liu
High Precision Spatiotemporal Datum Design Based on Ground Observation Position. CSPS (2019)
Zhentao Liu, Jeffrey Mock, Yufei Huang, Edward J. Golob
Predicting Auditory Spatial Attention from EEG using Single- and Multi-task Convolutional Neural Networks. SMC (2019)
Xiaohui Xie, Jiaxin Mao, Yiqun Liu, Maarten de Rijke, Qingyao Ai, Yufei Huang, Min Zhang, Shaoping Ma
Improving Web Image Search with Contextual Information. CIKM (2019)
Jingxia Chen, Zijing Mao, Ru Zheng, Yufei Huang, Lifeng He
Feature Selection of Deep Learning Models for EEG-Based RSVP Target Detection. IEICE Trans. Inf. Syst. (4) (2019)
Md Musaddaqul Hasib, Zane Lybrand, Vanesa Nieto Estevez, Jenny Hsieh, Yufei Huang
Charactering hESCs Organoids from Electrical Signals with Machine Learning. BHI (2019)
Song-Yao Zhang, Shaowu Zhang, Xiaonan Fan, Jia Meng, Yidong Chen, Shou-Jiang Gao, Yufei Huang
Global analysis of N6-methyladenosine functions and its disease association using deep learning and network-based methods. PLoS Comput. Biol. 15 (1) (2019)
Sharaj Panwar, Paul Rad, Tzyy-Ping Jung, Yufei Huang
Modeling EEG data distribution with a Wasserstein Generative Adversarial Network to predict RSVP Events. CoRR (2019)
Milad Mostavi, Yu-Chiao Chiu, Yufei Huang, Yidong Chen
Convolutional neural network models for cancer type prediction based on gene expression. CoRR (2019)
Tapsya Nayak, Li-Wei Ko, Tzyy-Ping Jung, Yufei Huang
Target Classification in a Novel SSVEP-RSVP Based BCI Gaming System. SMC (2019)
Yufei Huang, Jia Xu, Xiangyu Lin, Xiongwen He, Ran Zhang, Wenjie Li
Research on Image Static Target Recognition and Extraction Based on Space Intelligent System. WISATS (2) (2019)
Ning Liu, Yufei Huang
The Satellite GPS Antenna In-Orbit Phase Center Calibration Method. CSPS (2019)
Sharaj Panwar, Paul Rad, John Quarles, Yufei Huang
Generating EEG signals of an RSVP Experiment by a Class Conditioned Wasserstein Generative Adversarial Network. SMC (2019)
Song-Yao Zhang, Shao-Wu Zhang, Xiao-Nan Fan, Teng Zhang, Jia Meng, Yufei Huang
FunDMDeep-m6A: identification and prioritization of functional differential m6A methylation genes. Bioinform. 35 (14) (2019)
Yufei Huang, Bo Hou, Wen Liu, Lidong Wu, Stephen Rainwater, Suogang Gao
On Approximation Algorithm for the Edge Metric Dimension Problem. AAIM (2019)
Yonggun Lee, Yufei Huang
Generating target/non-target images of an RSVP experiment from brain signals in by conditional generative adversarial network. BHI (2018)
Md Musaddaqul Hasib, Tapsya Nayak, Yufei Huang
A hierarchical LSTM model with attention for modeling EEG non-stationarity for human decision prediction. BHI (2018)
Songyao Zhang, Shaowu Zhang, Xiaonan Fan, Jia Meng, Yidong Chen, Yufei Huang
A Machine Learning Approach for Uncovering N6-methyladenosine-Disease Association. BCB (2018)
Mingzhu Lu, Yufei Huang
CLIPSeed: Achieving High Precision miRNA Binding Sites Prediction using PAR-CLIP Data. BIBM (2018)
Sirajul Salekin, Jianqiu (Michelle) Zhang, Yufei Huang
Base-pair resolution detection of transcription factor binding site by deep deconvolutional network. Bioinform. 34 (20) (2018)
Hui Liu, Huaizhi Wang, Zhen Wei, Songyao Zhang, Gang Hua, Shao-Wu Zhang, Lin Zhang, Shou-Jiang Gao, Jia Meng, Xing Chen, Yufei Huang
MeT-DB V2.0: elucidating context-specific functions of N6-methyl-adenosine methyltranscriptome. Nucleic Acids Res. 46 (Database-Issue) (2018)
Manuel Sanchez-Castillo, David Blanco, Isabel M. Tienda-Luna, Maria Carmen Carrion Perez, Yufei Huang
A Bayesian framework for the inference of gene regulatory networks from time and pseudo-time series data. Bioinform. 34 (6) (2018)
Yufei Huang, Onesun Steve Yoo, Bilal Gokpinar
Time Allocation in Entrepreneurial Selling: Impact of Consumer Peer Learning and Incumbent Reaction. IEEE Trans. Engineering Management 65 (4) (2018)
Yu-Chiao Chiu, Hung-I Harry Chen, Tinghe Zhang, Songyao Zhang, Aparna Gorthi, Li-Ju Wang, Yufei Huang, Yidong Chen
Predicting drug response of tumors from integrated genomic profiles by deep neural networks. CoRR (2018)
Fuquan Zhang, Zijing Mao, Yufei Huang, Lin Xu, Gangyi Ding
Deep Learning Models for EEG-based Rapid Serial Visual Presentation Event Classification. J. Inf. Hiding Multim. Signal Process. 9 (1) (2018)
Xiaodong Cui, Lin Zhang, Jia Meng, Manjeet K. Rao, Yidong Chen, Yufei Huang
MeTDiff: A Novel Differential RNA Methylation Analysis for MeRIP-Seq Data. IEEE ACM Trans. Comput. Biol. Bioinform. 15 (2) (2018)
Milad Mostavi, Sirajul Salekin, Yufei Huang
Deep-2'-O-Me: Predicting 2'-O-methylation sites by Convolutional Neural Networks. EMBC (2018)
Hung-I Harry Chen, Yu-Chiao Chiu, Tinghe Zhang, Songyao Zhang, Yufei Huang, Yidong Chen
GSAE: an autoencoder with embedded gene-set nodes for genomics functional characterization. CoRR (2018)
Mahmoud Abdelsalam, Ram Krishnan, Yufei Huang, Ravi S. Sandhu
Malware Detection in Cloud Infrastructures Using Convolutional Neural Networks. IEEE CLOUD (2018)

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Publication Activity (10 Years)

Top Topics

Top Venues

Yufei Huang