Yu-Chiao Chiu

Publication Activity (10 Years)

Years Active: 2013-2024
Publications (10 Years): 12

Top Topics

Top Venues

Briefings Bioinform.

Publications

Li-Ju Wang, Michael Ning, Tapsya Nayak, Michael J. Kasper, Satdarshan P. Monga, Yufei Huang, Yidong Chen, Yu-Chiao Chiu
shinyDeepDR: A user-friendly R Shiny app for predicting anti-cancer drug response using deep learning. Patterns 5 (2) (2024)
Yu-Ching Hsu, Yu-Chiao Chiu, Tzu-Pin Lu, Tzu-Hung Hsiao, Yidong Chen
Predicting drug response through tumor deconvolution by cancer cell lines. Patterns 5 (4) (2024)
Jian Zou, Osama Shah, Yu-Chiao Chiu, Tianzhou Ma, Jennifer M. Atkinson, Steffi Oesterreich, Adrian V. Lee, George C. Tseng
Systems approach for congruence and selection of cancer models towards precision medicine. PLoS Comput. Biol. 20 (1) (2024)
Mario Flores, Zhentao Liu, Tinghe Zhang, Md Musaddaqui Hasib, Yu-Chiao Chiu, Zhenqing Ye, Karla Paniagua, Sumin Jo, Jianqiu Zhang, Shou-Jiang Gao, Yu-Fang Jin, Yidong Chen, Yufei Huang
Deep learning tackles single-cell analysis - a survey of deep learning for scRNA-seq analysis. Briefings Bioinform. 23 (1) (2022)
Milad Mostavi, Yu-Chiao Chiu, Yidong Chen, Yufei Huang
CancerSiamese: one-shot learning for predicting primary and metastatic tumor types unseen during model training. BMC Bioinform. 22 (1) (2021)
Yu-Chiao Chiu, Hung-I Harry Chen, Aparna Gorthi, Milad Mostavi, Siyuan Zheng, Yufei Huang, Yidong Chen
Deep learning of pharmacogenomics resources: moving towards precision oncology. Briefings Bioinform. 21 (6) (2020)
Milad Mostavi, Yu-Chiao Chiu, Yufei Huang, Yidong Chen
Convolutional neural network models for cancer type prediction based on gene expression. CoRR (2019)
Yu-Chiao Chiu, Tzu-Hung Hsiao, Li-Ju Wang, Yidong Chen, Eric Y. Chuang
Analyzing Differential Regulatory Networks Modulated by Continuous-State Genomic Features in Glioblastoma Multiforme. IEEE ACM Trans. Comput. Biol. Bioinform. 15 (6) (2018)
Yu-Chiao Chiu, Hung-I Harry Chen, Tinghe Zhang, Songyao Zhang, Aparna Gorthi, Li-Ju Wang, Yufei Huang, Yidong Chen
Predicting drug response of tumors from integrated genomic profiles by deep neural networks. CoRR (2018)
Hung-I Harry Chen, Yu-Chiao Chiu, Tinghe Zhang, Songyao Zhang, Yufei Huang, Yidong Chen
GSAE: an autoencoder with embedded gene-set nodes for genomics functional characterization. CoRR (2018)
Yu-Chiao Chiu, Li-Ju Wang, Tzu-Pin Lu, Tzu-Hung Hsiao, Eric Y. Chuang, Yidong Chen
Differential correlation analysis of glioblastoma reveals immune ceRNA interactions predictive of patient survival. BMC Bioinform. 18 (1) (2017)
Yu-Ching Hsu, Yu-Chiao Chiu, Yidong Chen, Tzu-Hung Hsiao, Eric Y. Chuang
A simple gene set-based method accurately predicts the synergy of drug pairs. BMC Syst. Biol. 10 (S-3) (2016)
Chin-Ting Wu, Tzu-Hung Hsiao, Yu-Chiao Chiu, Yu-Ching Hsu, Eric Y. Chuang, Yidong Chen
Patho-finder - A fast and accurate program for pathogen identification through RNA-seq. BIBM (2015)
Yu-Chiao Chiu, Kai-Wen Liang, Tzu-Hung Hsiao, Yidong Chen, Eric Y. Chuang
Analyzing differential regulatory networks modulated by continuous-state genomic features in glioblastoma multiforme. BIBM (2015)
Mau-Tsuen Yang, Yu-Chiao Chiu
Note-Taking for 3D Curricular Contents using Markerless Augmented Reality. Interact. Comput. 26 (4) (2014)
Yu-Chiao Chiu, Eric Y. Chuang, Tzu-Hung Hsiao, Yidong Chen
Characterization of conditions for competing endogenous RNA regulation in GBM. GENSiPS (2013)
Mario Flores, Tzu-Hung Hsiao, Yu-Chiao Chiu, Eric Y. Chuang, Yufei Huang, Yidong Chen
Gene Regulation, Modulation, and Their Applications in Gene Expression Data Analysis. Adv. Bioinformatics 2013 (2013)
Yu-Chiao Chiu, Eric Y. Chuang, Tzu-Hung Hsiao, Yidong Chen
Modeling competing endogenous RNA regulatory networks in glioblastoma multiforme. BIBM (2013)