Eric Y. Chuang

Publication Activity (10 Years)

Years Active: 2004-2024
Publications (10 Years): 19

Top Topics

Gene Expression

Top Venues

IEEE ACM Trans. Comput. Biol. Bioinform.

Database J. Biol. Databases Curation

Publications

Zhao-Qi Hu, Yuan-Mao Hung, Li-Han Chen, Liang-Chuan Lai, Min-Hsiung Pan, Eric Y. Chuang, Mong-Hsun Tsai
NURECON: A Novel Online System for Determining Nutrition Requirements Based on Microbial Composition. IEEE ACM Trans. Comput. Biol. Bioinform. 21 (2) (2024)
Amrita Chattopadhyay, Chien-Yueh Lee, Ying-Cheng Shen, Kuan-Chen Lu, Tzu-Hung Hsiao, Ching-Heng Lin, Liang-Chuan Lai, Mong-Hsun Tsai, Tzu-Pin Lu, Eric Y. Chuang
Multi-ethnic Imputation System (MI-System): A genotype imputation server for high-dimensional data. J. Biomed. Informatics 143 (2023)
Amrita Chattopadhyay, Ching-Yu Shih, Yu-Chen Hsu, Jyh-Ming Jimmy Juang, Eric Y. Chuang, Tzu-Pin Lu
CLIN_SKAT: an R package to conduct association analysis using functionally relevant variants. BMC Bioinform. 23 (1) (2022)
Yuan-Mao Hung, Wei-Ni Lyu, Ming-Lin Tsai, Chiang-Lin Liu, Liang-Chuan Lai, Mong-Hsun Tsai, Eric Y. Chuang
To compare the performance of prokaryotic taxonomy classifiers using curated 16S full-length rRNA sequences. Comput. Biol. Medicine 145 (2022)
Yu-Peng Hsieh, Yuan-Mao Hung, Mong-Hsun Tsai, Liang-Chuan Lai, Eric Y. Chuang
16S-ITGDB: An Integrated Database for Improving Species Classification of Prokaryotic 16S Ribosomal RNA Sequences. Frontiers Bioinform. 2 (2022)
Untari Novia Wisesty, Ayu Purwarianti, Adi Pancoro, Amrita Chattopadhyay, Nam Nhut Phan, Eric Y. Chuang, Tati Rajab Mengko
Join Classifier of Type and Index Mutation on Lung Cancer DNA Using Sequential Labeling Model. IEEE Access 10 (2022)
Amrita Chattopadhyay, Zi Han Teoh, Chi-Yun Wu, Jyh-Ming Jimmy Juang, Liang-Chuan Lai, Mong-Hsun Tsai, Chia-Hsin Wu, Tzu-Pin Lu, Eric Y. Chuang
CNVIntegrate: the first multi-ethnic database for identifying copy number variations associated with cancer. Database J. Biol. Databases Curation 2021 (2021)
Yuan-Mao Hung, Mong-Hsun Tsai, Liang-Chuan Lai, Eric Y. Chuang
ATTRACTIVE - An Auto-Updating Database for Experimental Protocols in Regenerative Medicine. IEEE Access 9 (2021)
Kuan-Hao Chao, Yi-Wen Hsiao, Yi-Fang Lee, Chien-Yueh Lee, Liang-Chuan Lai, Mong-Hsun Tsai, Tzu-Pin Lu, Eric Y. Chuang
RNASeqR: An R Package for Automated Two-Group RNA-Seq Analysis Workflow. IEEE ACM Trans. Comput. Biol. Bioinform. 18 (5) (2021)
Nam Nhut Phan, Amrita Chattopadhyay, Tsui-Ting Lee, Hsiang-I Yin, Tzu-Pin Lu, Liang-Chuan Lai, Hsiao-Lin Hwa, Mong-Hsun Tsai, Eric Y. Chuang
High-performance deep learning pipeline predicts individuals in mixtures of DNA using sequencing data. Briefings Bioinform. 22 (6) (2021)
Ti-Tai Wang, Chien-Yueh Lee, Liang-Chuan Lai, Mong-Hsun Tsai, Tzu-Pin Lu, Eric Y. Chuang
anamiR: integrated analysis of MicroRNA and gene expression profiling. BMC Bioinform. 20 (1) (2019)
Chien-Yueh Lee, Amrita Chattopadhyay, Li-Mei Chiang, Jyh-Ming Jimmy Juang, Liang-Chuan Lai, Mong-Hsun Tsai, Tzu-Pin Lu, Eric Y. Chuang
VariED: the first integrated database of gene annotation and expression profiles for variants related to human diseases. Database J. Biol. Databases Curation 2019 (2019)
Yi-Fang Lee, Chien-Yueh Lee, Liang-Chuan Lai, Mong-Hsun Tsai, Tzu-Pin Lu, Eric Y. Chuang
CellExpress: a comprehensive microarray-based cancer cell line and clinical sample gene expression analysis online system. Database J. Biol. Databases Curation 2018 (2018)
Yu-Chiao Chiu, Tzu-Hung Hsiao, Li-Ju Wang, Yidong Chen, Eric Y. Chuang
Analyzing Differential Regulatory Networks Modulated by Continuous-State Genomic Features in Glioblastoma Multiforme. IEEE ACM Trans. Comput. Biol. Bioinform. 15 (6) (2018)
Yu-Chiao Chiu, Li-Ju Wang, Tzu-Pin Lu, Tzu-Hung Hsiao, Eric Y. Chuang, Yidong Chen
Differential correlation analysis of glioblastoma reveals immune ceRNA interactions predictive of patient survival. BMC Bioinform. 18 (1) (2017)
Yi-Pin Lai, Liang-Bo Wang, Wei-An Wang, Liang-Chuan Lai, Mong-Hsun Tsai, Tzu-Pin Lu, Eric Y. Chuang
iGC - an integrated analysis package of gene expression and copy number alteration. BMC Bioinform. 18 (1) (2017)
Yu-Ching Hsu, Yu-Chiao Chiu, Yidong Chen, Tzu-Hung Hsiao, Eric Y. Chuang
A simple gene set-based method accurately predicts the synergy of drug pairs. BMC Syst. Biol. 10 (S-3) (2016)
Chin-Ting Wu, Tzu-Hung Hsiao, Yu-Chiao Chiu, Yu-Ching Hsu, Eric Y. Chuang, Yidong Chen
Patho-finder - A fast and accurate program for pathogen identification through RNA-seq. BIBM (2015)
Yu-Chiao Chiu, Kai-Wen Liang, Tzu-Hung Hsiao, Yidong Chen, Eric Y. Chuang
Analyzing differential regulatory networks modulated by continuous-state genomic features in glioblastoma multiforme. BIBM (2015)
Chi-Cheng Huang, Shih-Hsin Tu, Heng-Hui Lien, Jaan-Yeh Jeng, Jung-Sen Liu, Ching-Shui Huang, Liang-Chuan Lai, Eric Y. Chuang
Estrogen receptor status prediction by gene component regression: a comparative study. Int. J. Data Min. Bioinform. 9 (2) (2014)
Tzu-Pin Lu, Eric Y. Chuang, James J. Chen
Identification of reproducible gene expression signatures in lung adenocarcinoma. BMC Bioinform. 14 (2013)
Yu-Chiao Chiu, Eric Y. Chuang, Tzu-Hung Hsiao, Yidong Chen
Characterization of conditions for competing endogenous RNA regulation in GBM. GENSiPS (2013)
Mario Flores, Tzu-Hung Hsiao, Yu-Chiao Chiu, Eric Y. Chuang, Yufei Huang, Yidong Chen
Gene Regulation, Modulation, and Their Applications in Gene Expression Data Analysis. Adv. Bioinformatics 2013 (2013)
Yu-Chiao Chiu, Eric Y. Chuang, Tzu-Hung Hsiao, Yidong Chen
Modeling competing endogenous RNA regulatory networks in glioblastoma multiforme. BIBM (2013)
Pei-Chun Chen, Tzu-Pin Lu, Jung-Chih Chang, Liang-Chuan Lai, Mong-Hsun Tsai, Chuhsing Kate Hsiao, Eric Y. Chuang
Concurrent analysis of copy number variation and gene expression: application in paired non-smoking female lung cancer patients. Int. J. Data Min. Bioinform. 8 (1) (2013)
Tzu-Hung Hsiao, Hung-I Harry Chen, Yidong Chen, Yu-Heng Chen, Eric Y. Chuang
Using gene sets to identify putative drugs for breast cancer. BIBM (2012)
Hsien-Chi Kuo, Po-Yu Lin, Ting-Chiun Chung, Chin-Mei Chao, Liang-Chuan Lai, Mong-Hsun Tsai, Eric Y. Chuang
DBCAT: Database of CpG Islands and Analytical Tools for Identifying Comprehensive Methylation Profiles in Cancer Cells. J. Comput. Biol. 18 (8) (2011)
Chi-Cheng Huang, Heng-Hui Lien, Eric Y. Chuang, Shih-Hsin Tu, Ching-Shui Huang, Liang-Chuan Lai
Projecting partial least square and principle component regression across microarray studies. BIBM Workshops (2010)
Lee H. Chen, Liang-Chuan Lai, Chuhsing Kate Hsiao, Pei-Chun Chen, Mong-Hsun Tsai, Wen-Hung Kuo, King-Jen Chang, Eric Y. Chuang
Comparison of triple negative breast cancer between Asian and western data sets. BIBM Workshops (2010)
Tzu-Pin Lu, Liang-Chuan Lai, Chuhsing Kate Hsiao, Pei-Chun Chen, Mong-Hsun Tsai, Eric Y. Chuang
Concurrent analysis of copy number variations and expression profiles to identify genes associated with tumorigenesis and survival outcome in lung adenocarcinoma. BIBM (2010)
Jung-Chih Chang, Tzu-Pin Lu, Eric Y. Chuang, Liang-Chuan Lai, Mong-Hsun Tsai, Chuhsing Kate Hsiao, Pei-Chun Chen
Concurrent analysis of copy number variation and gene expression: Application in paired non-smoking female lung cancer patients. BIBM (2010)
Jo-Yang Lu, Eric Y. Chuang, Chuhsing Kate Hsiao, Mong-Hsun Tsai, Liang-Chuan Lai, Pei-Chun Chen
Utilizing Cox regression model to assess the relations between predefined gene sets and the survival outcome of lung adenocarcinoma. BIBM (2010)
Hung-I Harry Chen, Fang-Han Hsu, Yuan Jiang, Mong-Hsun Tsai, Pan-Chyr Yang, Paul S. Meltzer, Eric Y. Chuang, Yidong Chen
A probe-density-based analysis method for array CGH data: simulation, normalization and centralization. Bioinform. 24 (16) (2008)
Hung-I Harry Chen, Fang-Han Hsu, Yuan Jiang, Mong-Hsun Tsai, Pan-Chyr Yang, Paul S. Meltzer, Eric Y. Chuang, Yidong Chen
A probe-density-based analysis method for array CGH data: simulation, normalization and centralization. Bioinform. 24 (19) (2008)
Lori E. Dodd, Edward L. Korn, Lisa M. McShane, G. V. R. Chandramouli, Eric Y. Chuang
Correcting log ratios for signal saturation in cDNA microarrays. Bioinform. 20 (16) (2004)