James J. Chen

Publication Activity (10 Years)

Years Active: 2004-2021
Publications (10 Years): 6

Top Topics

Frequent Subsequences

Gene Expression

Top Venues

Briefings Bioinform.

J. Am. Medical Informatics Assoc.

Publications

Weizhong Zhao, Huyen Le, James J. Chen, Hesha J. Duggirala, Richard Forshee, Taxiarchis Botsis, Henry Francis, Huixiao Hong, Weida Tong, Yi-Ting Hwang, Wen Zou
Discovering Drug-Drug Associations in the FDA Adverse Event Reporting System Database with Data Mining Approaches. BIBM (2021)
Wen Zou, Weizhong Zhao, James J. Chen, Roger Perkins
Best Setting of Model Parameters in Applying Topic Modeling on Textual Documents. BCB (2017)
Weizhong Zhao, James J. Chen, Roger Perkins, Yuping Wang, Zhichao Liu, Huixiao Hong, Weida Tong, Wen Zou
Erratum to: A novel procedure on next generation sequencing data analysis using text mining algorithm. BMC Bioinform. 17 (2016)
Hesha J. Duggirala, Joseph M. Tonning, Ella Smith, Roselie A. Bright, John D. Baker, Robert Ball, Carlos Bell, Susan J. Bright-Ponte, Taxiarchis Botsis, Khaled Bouri, Marc Boyer, Keith Burkhart, G. Steven Condrey, James J. Chen, Stuart Chirtel, Ross W. Filice, Henry Francis, Hongying Jiang, Jonathan Levine, David Martin, Taiye Oladipo, Rene O'Neill, Lee Anne M. Palmer, Antonio Paredes, George Rochester, Deborah Sholtes, Ana Szarfman, Hui-Lee Wong, Zhiheng Xu, Taha A. Kass-Hout
Use of data mining at the Food and Drug Administration. J. Am. Medical Informatics Assoc. 23 (2) (2016)
Weizhong Zhao, James J. Chen, Roger Perkins, Yuping Wang, Zhichao Liu, Huixiao Hong, Weida Tong, Wen Zou
A novel procedure on next generation sequencing data analysis using text mining algorithm. BMC Bioinform. 17 (2016)
Weizhong Zhao, James J. Chen, Roger Perkins, Zhichao Liu, Weigong Ge, Yijun Ding, Wen Zou
A heuristic approach to determine an appropriate number of topics in topic modeling. BMC Bioinform. 16 (S13) (2015)
Weizhong Zhao, Wen Zou, James J. Chen
Topic modeling for cluster analysis of large biological and medical datasets. BMC Bioinform. 15 (S-11) (2014)
Wei-Jiun Lin, James J. Chen
Class-imbalanced classifiers for high-dimensional data. Briefings Bioinform. 14 (1) (2013)
Tzu-Pin Lu, Eric Y. Chuang, James J. Chen
Identification of reproducible gene expression signatures in lung adenocarcinoma. BMC Bioinform. 14 (2013)
Wen Zou, Hailin Tang, Weizhong Zhao, Joe Meehan, Steven L. Foley, Wei-Jiun Lin, Hung-Chia Chen, Hong Fang, Rajesh Nayak, James J. Chen
Data mining tools for Salmonella characterization: application to gel-based fingerprinting analysis. BMC Bioinform. 14 (S-14) (2013)
Hong Fang, Joshua Xu, Don Ding, Scott A. Jackson, Isha R. Patel, Jonathan G. Frye, Wen Zou, Rajesh Nayak, Steven L. Foley, James J. Chen, Zhenqiang Su, Yanbin Ye, Steve Turner, Steve Harris, Guangxu Zhou, Carl Cerniglia, Weida Tong
An FDA bioinformatics tool for microbial genomics research on molecular characterization of bacterial foodborne pathogens using microarrays. BMC Bioinform. 11 (S-6) (2010)
Wei-Jiun Lin, Huey-miin Hsueh, James J. Chen
Power and sample size estimation in microarray studies. BMC Bioinform. 11 (2010)
Chen-An Tsai, James J. Chen
Multivariate analysis of variance test for gene set analysis. Bioinform. 25 (7) (2009)
Songjoon Baek, Chen-An Tsai, James J. Chen
Development of biomarker classifiers from high-dimensional data. Briefings Bioinform. 10 (5) (2009)
Ralph L. Kodell, Bruce A. Pearce, Songjoon Baek, Hojin Moon, Hongshik Ahn, John F. Young, James J. Chen
A model-free ensemble method for class prediction with application to biomedical decision making. Artif. Intell. Medicine 46 (3) (2009)
Huixiao Hong, Zhenqiang Su, Weigong Ge, Leming M. Shi, Roger Perkins, Hong Fang, Joshua Xu, James J. Chen, Tao Han, Jim Kaput, James C. Fuscoe, Weida Tong
Assessing batch effects of genotype calling algorithm BRLMM for the Affymetrix GeneChip Human Mapping 500 K array set using 270 HapMap samples. BMC Bioinform. 9 (S-9) (2008)
James J. Chen, Chen-An Tsai, ShengLi Tzeng, Chun-Houh Chen
Gene selection with multiple ordering criteria. BMC Bioinform. 8 (2007)
Hojin Moon, Hongshik Ahn, Ralph L. Kodell, Songjoon Baek, Chien-Ju Lin, James J. Chen
Ensemble methods for classification of patients for personalized medicine with high-dimensional data. Artif. Intell. Medicine 41 (3) (2007)
James J. Chen, Huey-miin Hsueh, Robert R. Delongchamp, Chien-Ju Lin, Chen-An Tsai
Reproducibility of microarray data: a further analysis of microarray quality control (MAQC) data. BMC Bioinform. 8 (2007)
Chen-An Tsai, James J. Chen
Kernel estimation for adjusted p. Comput. Stat. Data Anal. 51 (8) (2007)
James J. Chen, Taewon Lee, Robert R. Delongchamp, Tao Chen, Chen-An Tsai
Significance analysis of groups of genes in expression profiling studies. Bioinform. 23 (16) (2007)
Hongshik Ahn, Hojin Moon, Melissa J. Fazzari, Noha Lim, James J. Chen, Ralph L. Kodell
Classification by ensembles from random partitions of high-dimensional data. Comput. Stat. Data Anal. 51 (12) (2007)
Leming M. Shi, Weida Tong, Hong Fang, Uwe Scherf, Jing Han, Raj K. Puri, Felix W. Frueh, Federico M. Goodsaid, Lei Guo, Zhenqiang Su, Tao Han, James C. Fuscoe, Z. Alex Xu, Tucker A. Patterson, Huixiao Hong, Qian Xie, Roger Perkins, James J. Chen, Daniel A. Casciano
Cross-platform comparability of microarray technology: Intra-platform consistency and appropriate data analysis procedures are essential. BMC Bioinform. 6 (S-2) (2005)
Leming M. Shi, Weida Tong, Zhenqiang Su, Tao Han, Jing Han, Raj K. Puri, Hong Fang, Felix W. Frueh, Federico M. Goodsaid, Lei Guo, William S. Branham, James J. Chen, Z. Alex Xu, Stephen C. Harris, Huixiao Hong, Qian Xie, Roger Perkins, James C. Fuscoe
Microarray scanner calibration curves: characteristics and implications. BMC Bioinform. 6 (S-2) (2005)
Chen-An Tsai, Sue-Jane Wang, Dung-Tsa Chen, James J. Chen
Sample size for gene expression microarray experiments. Bioinform. 21 (8) (2005)
Dung-Tsa Chen, James J. Chen, Seng-jaw Soong
Probe rank approaches for gene selection in oligonucleotide arrays with a small number of replicates. Bioinform. 21 (12) (2005)
Yunhee Choi, Hongshik Ahn, James J. Chen
Regression trees for analysis of count data with extra Poisson variation. Comput. Stat. Data Anal. 49 (3) (2005)
Sue-Jane Wang, James J. Chen
Sample Size for Identifying Differentially Expressed Genes in Microarray Experiments. J. Comput. Biol. 11 (4) (2004)
James J. Chen, Robert R. Delongchamp, Chen-An Tsai, Huey-miin Hsueh, Frank Sistare, Karol L. Thompson, Varsha G. Desai, James C. Fuscoe
Analysis of variance components in gene expression data. Bioinform. 20 (9) (2004)