Leming M. Shi

Publication Activity (10 Years)

Years Active: 1997-2011
Publications (10 Years): 0

Publications

Minjun Chen, Leming M. Shi, Reagan Kelly, Roger Perkins, Hong Fang, Weida Tong
Selecting a single model or combining multiple models for microarray-based classifier development? - A comparative analysis based on large and diverse datasets generated from the MAQC-II project. BMC Bioinform. 12 (S-10) (2011)
Huixiao Hong, Qilong Hong, Roger Perkins, Leming M. Shi, Hong Fang, Zhenqiang Su, Yvonne P. Dragan, James C. Fuscoe, Weida Tong
The Accurate Prediction of Protein Family from Amino Acid Sequence by Measuring Features of Sequence Fragments. J. Comput. Biol. 16 (12) (2009)
Zhiguang Li, Zhenqiang Su, Zhining Wen, Leming M. Shi, Tao Chen
Microarray platform consistency is revealed by biologically functional analysis of gene expression profiles. BMC Bioinform. 10 (S-11) (2009)
Huixiao Hong, Zhenqiang Su, Weigong Ge, Leming M. Shi, Roger Perkins, Hong Fang, Joshua Xu, James J. Chen, Tao Han, Jim Kaput, James C. Fuscoe, Weida Tong
Assessing batch effects of genotype calling algorithm BRLMM for the Affymetrix GeneChip Human Mapping 500 K array set using 270 HapMap samples. BMC Bioinform. 9 (S-9) (2008)
Leming M. Shi, Wendell D. Jones, Roderick V. Jensen, Stephen C. Harris, Roger Perkins, Federico M. Goodsaid, Lei Guo, Lisa J. Croner, Cecilie Boysen, Hong Fang, Feng Qian, Shashi Amur, Wenjun Bao, Catalin C. Barbacioru, Vincent Bertholet, Xiaoxi Megan Cao, Tzu-Ming Chu, Patrick J. Collins, Xiao-hui Fan, Felix W. Frueh
The balance of reproducibility, sensitivity, and specificity of lists of differentially expressed genes in microarray studies. BMC Bioinform. 9 (S-9) (2008)
Zhenqiang Su, Huixiao Hong, Hong Fang, Leming M. Shi, Roger Perkins, Weida Tong
Very Important Pool (VIP) genes - an application for microarray-based molecular signatures. BMC Bioinform. 9 (S-9) (2008)
Nan Mei, Lei Guo, Lu Zhang, Leming M. Shi, Yongming Andrew Sun, Chris Fung, Carrie L. Moland, Stacey L. Dial, James C. Fuscoe, Tao Chen
). BMC Bioinform. 7 (S-2) (2006)
Lei Guo, Hong Fang, Jim Collins, Xiao-hui Fan, Stacey L. Dial, Alex Wong, Kshama Mehta, Ernice Blann, Leming M. Shi, Weida Tong, Yvonne P. Dragan
Differential gene expression in mouse primary hepatocytes exposed to the peroxisome proliferator-activated receptor alpha agonists. BMC Bioinform. 7 (S-2) (2006)
Tao Han, Cathy D. Melvin, Leming M. Shi, William S. Branham, Carrie L. Moland, P. Scott Pine, Karol L. Thompson, James C. Fuscoe
Improvement in the Reproducibility and Accuracy of DNA Microarray Quantification by Optimizing Hybridization Conditions. BMC Bioinform. 7 (S-2) (2006)
Tao Chen, Lei Guo, Lu Zhang, Leming M. Shi, Hong Fang, Yongming Sun, James C. Fuscoe, Nan Mei
Gene Expression Profiles Distinguish the Carcinogenic Effects of Aristolochic Acid in Target (Kidney) and Non-target (Liver) Tissues in Rats. BMC Bioinform. 7 (S-2) (2006)
Yongxi Tan, Leming M. Shi, Saber M. Hussain, Jun Xu, Weida Tong, John M. Frazier, Charles Wang
Integrating time-course microarray gene expression profiles with cytotoxicity for identification of biomarkers in primary rat hepatocytes exposed to cadmium. Bioinform. 22 (1) (2006)
Zengjun Xu, Tucker A. Patterson, Jonathan D. Wren, Tao Han, Leming M. Shi, Helen Duhart, Syed F. Ali, William Slikker Jr.
-treated PC12 Cells: Mechanisms of toxicity (MOT) analysis using bioinformatics tools. BMC Bioinform. 6 (S-2) (2005)
Leming M. Shi, Weida Tong, Hong Fang, Uwe Scherf, Jing Han, Raj K. Puri, Felix W. Frueh, Federico M. Goodsaid, Lei Guo, Zhenqiang Su, Tao Han, James C. Fuscoe, Z. Alex Xu, Tucker A. Patterson, Huixiao Hong, Qian Xie, Roger Perkins, James J. Chen, Daniel A. Casciano
Cross-platform comparability of microarray technology: Intra-platform consistency and appropriate data analysis procedures are essential. BMC Bioinform. 6 (S-2) (2005)
Leming M. Shi, Weida Tong, Zhenqiang Su, Tao Han, Jing Han, Raj K. Puri, Hong Fang, Felix W. Frueh, Federico M. Goodsaid, Lei Guo, William S. Branham, James J. Chen, Z. Alex Xu, Stephen C. Harris, Huixiao Hong, Qian Xie, Roger Perkins, James C. Fuscoe
Microarray scanner calibration curves: characteristics and implications. BMC Bioinform. 6 (S-2) (2005)
Huixiao Hong, Yvonne P. Dragan, Joshua Epstein, Candee Teitel, Bangzheng Chen, Qian Xie, Hong Fang, Leming M. Shi, Roger Perkins, Weida Tong
Quality control and quality assessment of data from surface-enhanced laser desorption/ionization (SELDI) time-of flight (TOF) mass spectrometry (MS). BMC Bioinform. 6 (S-2) (2005)
Hong Fang, Weida Tong, Roger Perkins, Leming M. Shi, Huixiao Hong, X. Cao, Qian Xie, S. H. Yim, J. M. Ward, Henry C. Pitot, Yvonne P. Dragan
Bioinformatics approaches for cross-species liver cancer analysis based on microarray gene expression profiling. BMC Bioinform. 6 (S-2) (2005)
Yongxi Tan, Leming M. Shi, Weida Tong, G. T. Gene Hwang, Charles Wang
Multi-class tumor classification by discriminant partial least squares using microarray gene expression data and assessment of classification models. Comput. Biol. Chem. 28 (3) (2004)
Chenzhong Liao, Aihua Xie, Leming M. Shi, Jiaju Zhou, Xianping Lu
Eigenvalue Analysis of Peroxisome Proliferator-Activated Receptor gamma Agonists. J. Chem. Inf. Model. 44 (1) (2004)
Leming M. Shi, Hong Fang, Weida Tong, Jie Wu, Roger Perkins, Robert M. Blair, William S. Branham, Stacey L. Dial, Carrie L. Moland, Daniel M. Sheehan
QSAR Models Using a Large Diverse Set of Estrogens. J. Chem. Inf. Comput. Sci. 41 (1) (2001)
Leming M. Shi, Yi Fan, Jae K. Lee, Mark Waltham, Darren T. Andrews, Uwe Scherf, Kenneth D. Paull, John N. Weinstein
Mining and Visualizing Large Anticancer Drug Discovery Databases. J. Chem. Inf. Comput. Sci. 40 (2) (2000)
Leming M. Shi, Yi Fan, Timothy G. Myers, Patrick M. O'Connor, Kenneth D. Paull, Stephen H. Friend, John N. Weinstein
Mining the NCI Anticancer Drug Discovery Databases: Genetic Function Approximation for the QSAR Study of Anticancer Ellipticine Analogues. J. Chem. Inf. Comput. Sci. 38 (2) (1998)
Leming M. Shi, Yi Fan, Timothy G. Myers, John N. Weinstein
Genetic function approximation in the molecular pharmacology of cancer. ICNN (1997)