Taxiarchis Botsis

Publication Activity (10 Years)

Years Active: 2003-2023
Publications (10 Years): 18

Top Topics

Decision Support

Clinical Information

Machine Learning

Top Venues

J. Biomed. Informatics

Artif. Intell. Medicine

Publications

Ting He, Anas Belouali, Jessica Patricoski, Harold P. Lehmann, Robert Ball, Valsamo Anagnostou, Kory Kreimeyer, Taxiarchis Botsis
Trends and opportunities in computable clinical phenotyping: A scoping review. J. Biomed. Informatics 140 (2023)
Kory Kreimeyer, Jonathan Spiker, Taxiarchis Botsis
Overcoming Major Barriers to Build Efficient Decision Support Systems in Pharmacovigilance. ICIMTH (2022)
Taxiarchis Botsis, Joseph Murray, Alessandro Leal, Doreen Palsgrove, Wei Wang, James R. White, Victor E. Velculescu, Valsamo Anagnostou
Natural Language Processing Approaches for Retrieval of Clinically Relevant Genomic Information in Cancer. ICIMTH (2022)
Weizhong Zhao, Huyen Le, James J. Chen, Hesha J. Duggirala, Richard Forshee, Taxiarchis Botsis, Henry Francis, Huixiao Hong, Weida Tong, Yi-Ting Hwang, Wen Zou
Discovering Drug-Drug Associations in the FDA Adverse Event Reporting System Database with Data Mining Approaches. BIBM (2021)
Xingtong Wang, Harold Lehmann, Taxiarchis Botsis
Can FHIR Support Standardization in Post-Market Safety Surveillance? MIE (2021)
Kory Kreimeyer, Oanh Dang, Jonathan Spiker, Monica A. Muñoz, Gary Rosner, Robert Ball, Taxiarchis Botsis
Feature engineering and machine learning for causality assessment in pharmacovigilance: Lessons learned from application to the FDA Adverse Event Reporting System. Comput. Biol. Medicine 135 (2021)
Jessica Patricoski, Kory Kreimeyer, Archana Balan, Kent Hardart, Jessica Tao, Valsamo Anagnostou, Taxiarchis Botsis
An Evaluation of Pretrained BERT Models for Comparing Semantic Similarity Across Unstructured Clinical Trial Texts. ICIMTH (2021)
Taxiarchis Botsis, Jennifer E. Fairman, Meghan Bridgid Moran, Valsamo Anagnostou
Visual storytelling enhances knowledge dissemination in biomedical science. J. Biomed. Informatics 107 (2020)
Ashenafi Zebene Woldaregay, Eirik Årsand, Ståle Walderhaug, David J. Albers, Lena Mamykina, Taxiarchis Botsis, Gunnar Hartvigsen
Data-driven modeling and prediction of blood glucose dynamics: Machine learning applications in type 1 diabetes. Artif. Intell. Medicine 98 (2019)
Abhishek Pandey, Kory Kreimeyer, Matthew Foster, Oanh Dang, Thomas Ly, Wei Wang, Richard Forshee, Taxiarchis Botsis
Adverse Event extraction from Structured Product Labels using the Event-based Text-mining of Health Electronic Records (ETHER) system. Health Informatics J. 25 (4) (2019)
Thomas Ly, Carol A. Pamer, Oanh Dang, Sonja Brajovic, Shahrukh Haider, Taxiarchis Botsis, David Milward, Andrew Winter, Susan Lu, Robert Ball
Evaluation of Natural Language Processing (NLP) systems to annotate drug product labeling with MedDRA terminology. J. Biomed. Informatics 83 (2018)
Taxiarchis Botsis, Matthew Foster, Kory Kreimeyer, Abhishek Pandey, Richard Forshee
Monitoring biomedical literature for post-market safety purposes by analyzing networks of text-based coded information. CRI (2017)
Kory Kreimeyer, Matthew Foster, Abhishek Pandey, Nina Arya, Gwendolyn Halford, Sandra F. Jones, Richard Forshee, Mark Walderhaug, Taxiarchis Botsis
Natural language processing systems for capturing and standardizing unstructured clinical information: A systematic review. J. Biomed. Informatics 73 (2017)
Taxiarchis Botsis, Matthew Foster, Nina Arya, Kory Kreimeyer, Abhishek Pandey, Deepa Arya
Application of Natural Language Processing and Network Analysis Techniques to Post-market Reports for the Evaluation of Dose-related Anti-Thymocyte Globulin Safety Patterns. Appl. Clin. Inform. 8 (02) (2017)
Ashenafi Zebene Woldaregay, Eirik Årsand, Taxiarchis Botsis, Gunnar Hartvigsen
An Early Infectious Disease Outbreak Detection Mechanism Based on Self-Recorded Data from People with Diabetes. MedInfo (2017)
Wei Wang, Kory Kreimeyer, Emily Jane Woo, Robert Ball, Matthew Foster, Abhishek Pandey, John Scott, Taxiarchis Botsis
A new algorithmic approach for the extraction of temporal associations from clinical narratives with an application to medical product safety surveillance reports. J. Biomed. Informatics 62 (2016)
Taxiarchis Botsis, Christopher Jankosky, Deepa Arya, Kory Kreimeyer, Matthew Foster, Abhishek Pandey, Wei Wang, Guangfan Zhang, Richard Forshee, Ravi Goud, David Menschik, Mark Walderhaug, Emily Jane Woo, John Scott
Decision support environment for medical product safety surveillance. J. Biomed. Informatics 64 (2016)
Hesha J. Duggirala, Joseph M. Tonning, Ella Smith, Roselie A. Bright, John D. Baker, Robert Ball, Carlos Bell, Susan J. Bright-Ponte, Taxiarchis Botsis, Khaled Bouri, Marc Boyer, Keith Burkhart, G. Steven Condrey, James J. Chen, Stuart Chirtel, Ross W. Filice, Henry Francis, Hongying Jiang, Jonathan Levine, David Martin, Taiye Oladipo, Rene O'Neill, Lee Anne M. Palmer, Antonio Paredes, George Rochester, Deborah Sholtes, Ana Szarfman, Hui-Lee Wong, Zhiheng Xu, Taha A. Kass-Hout
Use of data mining at the Food and Drug Administration. J. Am. Medical Informatics Assoc. 23 (2) (2016)
Taxiarchis Botsis, John Scott, Emily Jane Woo, Robert Ball
Identifying Similar Cases in Document Networks Using Cross-Reference Structures. IEEE J. Biomed. Health Informatics 19 (6) (2015)
Taxiarchis Botsis, John Scott, Ravi Goud, Pamela Toman, Andrea Sutherland, Robert Ball
Novel Algorithms for Improved Pattern Recognition Using the US FDA Adverse Event Network Analyzer. MIE (2014)
Taxiarchis Botsis, Thomas Buttolph, Michael D. Nguyen, Scott Winiecki, Emily Jane Woo, Robert Ball
Vaccine adverse event text mining system for extracting features from vaccine safety reports. J. Am. Medical Informatics Assoc. 19 (6) (2012)
Taxiarchis Botsis, Albert M. Lai, George Hripcsak, Walter Palmas, Justin B. Starren, Gunnar Hartvigsen
Proof of concept for the role of glycemic control in the early detection of infections in diabetics. Health Informatics J. 18 (1) (2012)
Taxiarchis Botsis, Michael D. Nguyen, Emily Jane Woo, Marianthi Markatou, Robert Ball
Text mining for the Vaccine Adverse Event Reporting System: medical text classification using informative feature selection. J. Am. Medical Informatics Assoc. 18 (5) (2011)
Taxiarchis Botsis, Robert Ball
Network Analysis of Possible Anaphylaxis Cases Reported to the US Vaccine Adverse Event Reporting System after H1N1 Influenza Vaccine. MIE (2011)
Taxiarchis Botsis, Carl-Fredrik Bassøe, Gunnar Hartvigsen
Sixteen years of ICPC use in Norwegian primary care: looking through the facts. BMC Medical Informatics Decis. Mak. 10 (2010)
Taxiarchis Botsis, Gunnar Hartvigsen
Exploring new directions in disease surveillance for people with diabetes: Lessons learned and future plans. MedInfo (2010)
Taxiarchis Botsis, Johan Gustav Bellika, Gunnar Hartvigsen
New Directions in Electronic Disease Surveillance: Detection of Infectious Diseases during the Incubation Period. eTELEMED (2009)
Taxiarchis Botsis, Ole K. Hejlesen, Johan Gustav Bellika, Gunnar Hartvigsen
Electronic Disease Surveillance for Sensitive Population Groups - The Diabetics Case Study. MIE (2008)
Taxiarchis Botsis, Konstantinos Syrigos
Implementation of a Computerized System in an Oncology Unit. Int. J. Heal. Inf. Syst. Informatics 2 (3) (2007)
Stelios Halkiotis, Taxiarchis Botsis, Maria Rangoussi
Automatic detection of clustered microcalcifications in digital mammograms using mathematical morphology and neural networks. Signal Process. 87 (7) (2007)
Taxiarchis Botsis, John Mantas
Mathematical modelling for the study of respiratory mechanics. MIE (2003)