Barry Honig

Publication Activity (10 Years)

Years Active: 1991-2019
Publications (10 Years): 3

Top Topics

High Throughput

Transcription Factors

Gene Regulatory

Top Venues

IEEE ACM Trans. Comput. Biol. Bioinform.

Nucleic Acids Res.

J. Am. Medical Informatics Assoc.

Publications

Lin Yuan, Le-Hang Guo, Chang-an Yuan, Youhua Zhang, Kyungsook Han, Asoke K. Nandi, Barry Honig, De-Shuang Huang
Integration of Multi-Omics Data for Gene Regulatory Network Inference and Application to Breast Cancer. IEEE ACM Trans. Comput. Biol. Bioinform. 16 (3) (2019)
Wenzheng Bao, Chang-An Yuan, Youhua Zhang, Kyungsook Han, Asoke K. Nandi, Barry Honig, De-Shuang Huang
Mutli-Features Prediction of Protein Translational Modification Sites. IEEE ACM Trans. Comput. Biol. Bioinform. 15 (5) (2018)
Zhen Shen, You-Hua Zhang, Kyungsook Han, Asoke K. Nandi, Barry Honig, De-Shuang Huang
miRNA-Disease Association Prediction with Collaborative Matrix Factorization. Complex. 2017 (2017)
T. Scott Chen, Donald Petrey, José Ignacio Garzón, Barry Honig
Predicting Peptide-Mediated Interactions on a Genome-Wide Scale. PLoS Comput. Biol. 11 (5) (2015)
Shula Shazman, Hunjoong Lee, Yakov Socol, Richard S. Mann, Barry Honig
transcription factors and their binding sites. Nucleic Acids Res. 42 (Database-Issue) (2014)
Qiangfeng Cliff Zhang, Donald Petrey, José Ignacio Garzón, Lei Deng, Barry Honig
PrePPI: a structure-informed database of protein-protein interactions. Nucleic Acids Res. 41 (Database-Issue) (2013)
Aris Floratos, Barry Honig, Dana Pe'er, Andrea Califano
Using systems and structure biology tools to dissect cellular phenotypes. J. Am. Medical Informatics Assoc. 19 (2) (2012)
Markus Fischer, Qiangfeng Cliff Zhang, Fabian Dey, Brian Y. Chen, Barry Honig, Donald Petrey
MarkUs: a server to navigate sequence-structure-function space. Nucleic Acids Res. 39 (Web-Server-Issue) (2011)
Qiangfeng Cliff Zhang, Lei Deng, Markus Fisher, Jihong Guan, Barry Honig, Donald Petrey
PredUs: a web server for predicting protein interfaces using structural neighbors. Nucleic Acids Res. 39 (Web-Server-Issue) (2011)
Andrew Kuziemko, Barry Honig, Donald Petrey
Using Structure to Explore the Sequence Alignment Space of Remote Homologs. PLoS Comput. Biol. 7 (10) (2011)
Brian Y. Chen, Barry Honig
VASP: A Volumetric Analysis of Surface Properties Yields Insights into Protein-Ligand Binding Specificity. PLoS Comput. Biol. 6 (8) (2010)
Raquel Norel, Donald Petrey, Barry Honig
PUDGE: a flexible, interactive server for protein structure prediction. Nucleic Acids Res. 38 (Web-Server-Issue) (2010)
Rachel Kolodny, Barry Honig
VISTAL - a new 2D visualization tool of protein 3D structural alignments. Bioinform. 22 (17) (2006)
Alona Sosinsky, Christopher P. Bonin, Richard S. Mann, Barry Honig
Target Explorer: an automated tool for the identification of new target genes for a specified set of transcription factors. Nucleic Acids Res. 31 (13) (2003)
Burkhard Rost, Barry Honig, Alfonso Valencia
Bioinformatics in structural genomics - Editorial. Bioinform. 18 (7) (2002)
Walter Rocchia, Sundaram Sridharan, Anthony Nicholls, Emil Alexov, Alessandro Chiabrera, Barry Honig
Rapid grid-based construction of the molecular surface and the use of induced surface charge to calculate reaction field energies: Applications to the molecular systems and geometric objects. J. Comput. Chem. 23 (1) (2002)
Ranganathan Bharadwaj, Andreas Windemuth, S. Sriharan, Barry Honig, Antony Nocholls
A Fast Multipole Boundary Element Method for Molecular Electrostatics: An Optimal Approach for Large Systems. J. Comput. Chem. 16 (7) (1995)
Michael K. Gilson, Barry Honig
The inclusion of electrostatic hydration energies in molecular mechanics calculations. J. Comput. Aided Mol. Des. 5 (1) (1991)