Qiangfeng Cliff Zhang

Publication Activity (10 Years)

Years Active: 2011-2023
Publications (10 Years): 13

Top Topics

Density Distribution

Secondary Structure

Top Venues

Nucleic Acids Res.

Genom. Proteom. Bioinform.

Publications

Boyang Shi, Ke An, Yueqin Wang, Yuhan Fei, Caixia Guo, Qiangfeng Cliff Zhang, Yun-Gui Yang, Xin Tian, Quancheng Kan
Translation in NSCLC Cells. Genom. Proteom. Bioinform. 21 (4) (2023)
Yiran Xu, Jianghui Zhu, Wenze Huang, Kui Xu, Rui Yang, Qiangfeng Cliff Zhang, Lei Sun
RNA structural information. Nucleic Acids Res. 51 (W1) (2023)
Jing Gong, Kui Xu, Ziyuan Ma, Zhi John Lu, Qiangfeng Cliff Zhang
A deep learning method for recovering missing signals in transcriptome-wide RNA structure profiles from probing experiments. Nat. Mach. Intell. 3 (11) (2021)
Kui Xu, Nan Liu, Jingle Xu, Chunlong Guo, Lingyun Zhao, Hongwei Wang, Qiangfeng Cliff Zhang
VRmol: an integrative web-based virtual reality system to explore macromolecular structure. Bioinform. 37 (7) (2021)
Pan Li, Xiaolin Zhou, Kui Xu, Qiangfeng Cliff Zhang
RASP: an atlas of transcriptome-wide RNA secondary structure probing data. Nucleic Acids Res. 49 (Database-Issue) (2021)
Jianyu Zhou, Pan Li, Wanwen Zeng, Wenxiu Ma, Zhipeng Lu, Rui Jiang, Qiangfeng Cliff Zhang, Tao Jiang
IRIS: A method for predicting in vivo RNA secondary structures using PARIS data. Quant. Biol. 8 (4) (2020)
Bo Yuan, Yao Lu, Qiangfeng Cliff Zhang, Lin Hou
Prediction and differential analysis of RNA secondary structure. Quant. Biol. 8 (2) (2020)
Kui Xu, Zhe Wang, Jianping Shi, Hongsheng Li, Qiangfeng Cliff Zhang
A^2-Net: Molecular Structure Estimation from Cryo-EM Density Volumes. CoRR (2019)
Kui Xu, Zhe Wang, Jianping Shi, Hongsheng Li, Qiangfeng Cliff Zhang
A2-Net: Molecular Structure Estimation from Cryo-EM Density Volumes. AAAI (2019)
Jing Gong, Yanyan Ju, Di Shao, Qiangfeng Cliff Zhang
Advances and challenges towards the study of RNA-RNA interactions in a transcriptome-wide scale. Quant. Biol. 6 (3) (2018)
Jing Gong, Di Shao, Kui Xu, Zhipeng Lu, Zhi John Lu, Yu-Cheng T. Yang, Qiangfeng Cliff Zhang
RISE: a database of RNA interactome from sequencing experiments. Nucleic Acids Res. 46 (Database-Issue) (2018)
Meiling Piao, Lei Sun, Qiangfeng Cliff Zhang
RNA Regulations and Functions Decoded by Transcriptome-wide RNA Structure Probing. Genom. Proteom. Bioinform. 15 (5) (2017)
Kun-Hsing Yu, Steven N. Hart, Rachel L. Goldfeder, Qiangfeng Cliff Zhang, Stephen C. J. Parker, Michael Snyder
Harnessing Big Data for Precision Medicine: Infrastructures and Applications. PSB (2017)
Lei Deng, Qiangfeng Cliff Zhang, Zhigang Chen, Yang Meng, Jihong Guan, Shuigeng Zhou
PredHS: a web server for predicting protein-protein interaction hot spots by using structural neighborhood properties. Nucleic Acids Res. 42 (Webserver-Issue) (2014)
Qiangfeng Cliff Zhang, Donald Petrey, José Ignacio Garzón, Lei Deng, Barry Honig
PrePPI: a structure-informed database of protein-protein interactions. Nucleic Acids Res. 41 (Database-Issue) (2013)
Lei Deng, Jihong Guan, Xiaoming Wei, Yuan Yi, Qiangfeng Cliff Zhang, Shuigeng Zhou
Boosting Prediction Performance of Protein-Protein Interaction Hot Spots by Using Structural Neighborhood Properties. J. Comput. Biol. 20 (11) (2013)
Markus Fischer, Qiangfeng Cliff Zhang, Fabian Dey, Brian Y. Chen, Barry Honig, Donald Petrey
MarkUs: a server to navigate sequence-structure-function space. Nucleic Acids Res. 39 (Web-Server-Issue) (2011)
Qiangfeng Cliff Zhang, Lei Deng, Markus Fisher, Jihong Guan, Barry Honig, Donald Petrey
PredUs: a web server for predicting protein interfaces using structural neighbors. Nucleic Acids Res. 39 (Web-Server-Issue) (2011)