Wanwen Zeng

Publication Activity (10 Years)

Years Active: 2016-2023
Publications (10 Years): 14

Top Topics

Gene Expression

Top Venues

Database J. Biol. Databases Curation

Nucleic Acids Res.

Publications

Qijin Yin, Rui Fan, Xusheng Cao, Qiao Liu, Rui Jiang, Wanwen Zeng
DeepDrug: A general graph-based deep learning framework for drug-drug interactions and drug-target interactions prediction. Quant. Biol. 11 (3) (2023)
Wanwen Zeng, Qiao Liu, Qijin Yin, Rui Jiang, Wing Hung Wong
HiChIPdb: a comprehensive database of HiChIP regulatory interactions. Nucleic Acids Res. 51 (D1) (2023)
Qiao Liu, Wanwen Zeng, Wei Zhang, Sicheng Wang, Hongyang Chen, Rui Jiang, Mu Zhou, Shaoting Zhang
Deep generative modeling and clustering of single cell Hi-C data. Briefings Bioinform. 24 (1) (2023)
Qijin Yin, Qiao Liu, Zhuoran Fu, Wanwen Zeng, Boheng Zhang, Xuegong Zhang, Rui Jiang, Hairong Lv
scGraph: a graph neural network-based approach to automatically identify cell types. Bioinform. 38 (11) (2022)
Wanwen Zeng, Shengquan Chen, Xuejian Cui, Xiaoyang Chen, Zijing Gao, Rui Jiang
SilencerDB: a comprehensive database of silencers. Nucleic Acids Res. 49 (Database-Issue) (2021)
Wanwen Zeng, Yong Wang, Rui Jiang
Integrating distal and proximal information to predict gene expression via a densely connected convolutional neural network. Bioinform. 36 (2) (2020)
Jianyu Zhou, Pan Li, Wanwen Zeng, Wenxiu Ma, Zhipeng Lu, Rui Jiang, Qiangfeng Cliff Zhang, Tao Jiang
IRIS: A method for predicting in vivo RNA secondary structures using PARIS data. Quant. Biol. 8 (4) (2020)
Wanwen Zeng, Xu Min, Rui Jiang
EnDisease: a manually curated database for enhancer-disease associations. Database J. Biol. Databases Curation 2019 (2019)
Wanwen Zeng, Mengmeng Wu, Rui Jiang
Prediction of enhancer-promoter interactions via natural language processing. BMC Genom. 19 (S2) (2018)
Xu Min, Wanwen Zeng, Shengquan Chen, Ning Chen, Ting Chen, Rui Jiang
Predicting enhancers with deep convolutional neural networks. BMC Bioinform. 18 (S-13) (2017)
Mengmeng Wu, Wanwen Zeng, Wenqiang Liu, Yijia Zhang, Ting Chen, Rui Jiang
Integrating embeddings of multiple gene networks to prioritize complex disease-associated genes. BIBM (2017)
Xu Min, Wanwen Zeng, Ning Chen, Ting Chen, Rui Jiang
Chromatin accessibility prediction via convolutional long short-term memory networks with k-mer embedding. Bioinform. 33 (14) (2017)
Mingxin Gan, Wenran Li, Wanwen Zeng, Xiaojian Wang, Rui Jiang
Mimvec: a deep learning approach for analyzing the human phenome. BMC Syst. Biol. 11 (S-4) (2017)
Jiaxin Wu, Mengmeng Wu, Lianshuo Li, Zhuo Liu, Wanwen Zeng, Rui Jiang
dbWGFP: a database and web server of human whole-genome single nucleotide variants and their functional predictions. Database J. Biol. Databases Curation 2016 (2016)