Bianca Habermann

Publication Activity (10 Years)

Years Active: 2004-2024
Publications (10 Years): 5

Top Topics

Mechanical Properties

Motif Discovery Algorithm

Top Venues

Database J. Biol. Databases Curation

Nucleic Acids Res.

J. Open Source Softw.

Publications

Ismahene Mesbah, Bianca Habermann, Felix Rico
MechanoProDB: a web-based database for exploring the mechanical properties of proteins. Database J. Biol. Databases Curation 2024 (2024)
Maxime Lucas, Alex Townsend-Teague, Matteo Neri, Simone Poetto, Arthur Morris, Bianca Habermann, Laurent Tichit
Phasik: a Python package to identify system states in partially temporal networks. J. Open Source Softw. 8 (92) (2023)
Rasmus Krempel, Pranav Kulkarni, Annie Yim, Ulrich Lang, Bianca Habermann, Peter Frommolt
Integrative analysis and machine learning on cancer genomics data using the Cancer Systems Biology Database (CancerSysDB). BMC Bioinform. 19 (1) (2018)
Roman Prytuliak, Friedhelm Pfeiffer, Bianca Habermann
SLALOM, a flexible method for the identification and statistical analysis of overlapping continuous sequence elements in sequence- and time-series data. BMC Bioinform. 19 (1) (2018)
Roman Prytuliak, Michael Volkmer, Markus Meier, Bianca Habermann
HH-MOTiF: de novo detection of short linear motifs in proteins by Hidden Markov Model comparisons. Nucleic Acids Res. 45 (Webserver-Issue) (2017)
Jose M. Villaveces, Rafael C. Jimenez, Pablo Porras, Noemi del-Toro, Margaret J. Duesbury, Marine Dumousseau, Sandra E. Orchard, H. Choi, Peipei Ping, N. C. Zong, Manor Askenazi, Bianca Habermann, Henning Hermjakob
Merging and scoring molecular interactions utilising existing community standards: tools, use-cases and a case study. Database J. Biol. Databases Curation 2015 (2015)
Ines Wagner, Michael Volkmer, Malvika Sharan, Jose M. Villaveces, Felix Oswald, Vineeth Surendranath, Bianca Habermann
morFeus: a web-based program to detect remotely conserved orthologs using symmetrical best hits and orthology network scoring. BMC Bioinform. 15 (2014)
Ron M. Stewart, Cynthia Alexander Rascón, Shulan Tian, Jeff Nie, Chris Barry, Li-Fang Chu, Hamisha Ardalani, Ryan J. Wagner, Mitchell D. Probasco, Jennifer M. Bolin, Ning Leng, Srikumar Sengupta, Michael Volkmer, Bianca Habermann, Elly M. Tanaka, James A. Thomson, Colin N. Dewey
Comparative RNA-seq Analysis in the Unsequenced Axolotl: The Oncogene Burst Highlights Early Gene Expression in the Blastema. PLoS Comput. Biol. 9 (3) (2013)
Vineeth Surendranath, Janet Chusainow, Joachim Hauber, Frank Buchholz, Bianca Habermann
SeLOX - a locus of recombination site search tool for the detection and directed evolution of site-specific recombination systems. Nucleic Acids Res. 38 (Web-Server-Issue) (2010)
Ed de Quincey, Helen Oliver, Patty Kostkova, Gawesh Jawaheer, Gemma Madle, Gayo Diallo, Dimitra Alexopoulou, Michael Schroeder, Bianca Habermann, Khaled Khelif, Simon Jupp, Robert Stevens
Mining for Patterns of Semantic Link Usage: Do Domain Users Actually Like Semantic Browsing? Web Intelligence/IAT Workshops (2009)
Helen Oliver, Gayo Diallo, Ed de Quincey, Dimitra Alexopoulou, Bianca Habermann, Patty Kostkova, Michael Schroeder, Simon Jupp, Khaled Khelif, Robert Stevens, Gawesh Jawaheer, Gemma Madle
A user-centred evaluation framework for the Sealife semantic web browsers. BMC Bioinform. 10 (S-10) (2009)
Charles Richard Bradshaw, Vineeth Surendranath, Bianca Habermann
ProFAT: a web-based tool for the functional annotation of protein sequences. BMC Bioinform. 7 (2006)
Michael Schroeder, Albert Burger, Patty Kostkova, Robert Stevens, Bianca Habermann, Rose Dieng-Kuntz
Sealife: A Semantic Grid Browser for the Life Sciences Applied to the Study of Infectious Diseases. HealthGrid (2006)
Andreas Henschel, Frank Buchholz, Bianca Habermann
DEQOR: a web-based tool for the design and quality control of siRNAs. Nucleic Acids Res. 32 (Web-Server-Issue) (2004)