Casey M. Bergman

Publication Activity (10 Years)

Years Active: 2004-2012
Publications (10 Years): 0

Top Topics

Entity Extraction

Textual Documents

Top Venues

Publications

Martin Gerner, Farzaneh Sarafraz, Casey M. Bergman, Goran Nenadic
BioContext: an integrated text mining system for large-scale extraction and contextualization of biomolecular events. Bioinform. 28 (16) (2012)
Steven M. Gallo, Dave T. Gerrard, David Miner, Michael Simich, Benjamin Des Soye, Casey M. Bergman, Marc S. Halfon
. Nucleic Acids Res. 39 (Database-Issue) (2011)
Maximilian Haeussler, Martin Gerner, Casey M. Bergman
Annotating genes and genomes with DNA sequences extracted from biomedical articles. Bioinform. 27 (7) (2011)
Jörg Hakenberg, Martin Gerner, Maximilian Haeussler, Illés Solt, Conrad Plake, Michael Schroeder, Graciela Gonzalez, Goran Nenadic, Casey M. Bergman
The GNAT library for local and remote gene mention normalization. Bioinform. 27 (19) (2011)
Martin Gerner, Goran Nenadic, Casey M. Bergman
An Exploration of Mining Gene Expression Mentions and Their Anatomical Locations from Biomedical Text. BioNLP@ACL (2010)
Martin Gerner, Goran Nenadic, Casey M. Bergman
LINNAEUS: A species name identification system for biomedical literature. BMC Bioinform. 11 (2010)
Hui Yang, John A. Keane, Casey M. Bergman, Goran Nenadic
Assigning roles to protein mentions: The case of transcription factors. J. Biomed. Informatics 42 (5) (2009)
Obi L. Griffith, Stephen B. Montgomery, Bridget Bernier, Bryan Chu, Katayoon Kasaian, Stein Aerts, Shaun Mahony, Monica C. Sleumer, Mikhail Bilenky, Maximilian Haeussler, Malachi Griffith, Steven M. Gallo, Belinda Giardine, Bart Hooghe, Peter Van Loo, Enrique Blanco, Amy Ticoll, Stuart Lithwick, Elodie Portales-Casamar, Ian J. Donaldson, Gordon Robertson, Claes Wadelius, Pieter J. De Bleser, Dominique Vlieghe, Marc S. Halfon, Wyeth W. Wasserman, Ross C. Hardison, Casey M. Bergman, Steven J. M. Jones
ORegAnno: an open-access community-driven resource for regulatory annotation. Nucleic Acids Res. 36 (Database-Issue) (2008)
Marc S. Halfon, Steven M. Gallo, Casey M. Bergman
. Nucleic Acids Res. 36 (Database-Issue) (2008)
Casey M. Bergman, Hadi Quesneville
Discovering and detecting transposable elements in genome sequences. Briefings Bioinform. 8 (6) (2007)
Thomas A. Down, Casey M. Bergman, Jing Su, Tim J. P. Hubbard
. PLoS Comput. Biol. 3 (1) (2007)
Stephen B. Montgomery, Obi L. Griffith, Monica C. Sleumer, Casey M. Bergman, Misha Bilenky, Erin Pleasance, Y. Prychyna, X. Zhang, Steven J. M. Jones
ORegAnno: an open access database and curation system for literature-derived promoters, transcription factor binding sites and regulatory variation. Bioinform. 22 (5) (2006)
Nora Pierstorff, Casey M. Bergman, Thomas Wiehe
-regulatory modules by combining comparative and compositional analysis of DNA. Bioinform. 22 (23) (2006)
Hadi Quesneville, Casey M. Bergman, Olivier Andrieu, Delphine Autard, Danielle Nouaud, Michael Ashburner, Dominique Anxolabéhère
Combined Evidence Annotation of Transposable Elements in Genome Sequences. PLoS Comput. Biol. 1 (2) (2005)
Casey M. Bergman, Joseph W. Carlson, Susan E. Celniker
Drosophila DNase I footprint database: a systematic genome annotation of transcription factor binding sites in the fruitfly, Drosophila melanogaster. Bioinform. 21 (8) (2005)
Daniel A. Pollard, Casey M. Bergman, Jens Stoye, Susan E. Celniker, Michael B. Eisen
Correction: Benchmarking tools for the alignment of functional noncodingDNA. BMC Bioinform. 5 (2004)
Daniel A. Pollard, Casey M. Bergman, Jens Stoye, Susan E. Celniker, Michael B. Eisen
Benchmarking tools for the alignment of functional noncoding DNA. BMC Bioinform. 5 (2004)