Graciela Gonzalez

Publication Activity (10 Years)

Years Active: 1998-2019
Publications (10 Years): 18

Top Topics

Text Classification

Top Venues

Pacific Symposium on Biocomputing

Publications

Graciela Gonzalez, Zhiyong Lu, Robert Leaman, Davy Weissenbacher, Mary Regina Boland, Yong Chen, Jingcheng Du, Juliane Fluck, Casey S. Greene, John H. Holmes, Aditya Kashyap, Rikke Linnemann Nielsen, Zhengqing Ouyang, Sebastian Schaaf, Jaclyn N. Taroni, Cui Tao, Yuping Zhang, Hongfang Liu
Text Mining and Machine Learning for Precision Medicine. PSB (2019)
Masoud Rouhizadeh, Arjun Magge, Ari Z. Klein, Abeed Sarker, Graciela Gonzalez
A Rule-based Approach to Determining Pregnancy Timeframe from Contextual Social Media Postings. DH (2018)
Arjun Magge, Matthew Scotch, Graciela Gonzalez
CSaRUS-CNN at AMIA-2017 Tasks 1, 2: Under Sampled CNN for Text Classification. SMM4H@AMIA (2017)
Abeed Sarker, Graciela Gonzalez
HLP$@$UPenn at SemEval-2017 Task 4A: A simple, self-optimizing text classification system combining dense and sparse vectors. SemEval@ACL (2017)
Pramod Bharadwaj Chandrashekar, Arjun Magge, Abeed Sarker, Graciela Gonzalez
Social media mining for identification and exploration of health-related information from pregnant women. CoRR (2017)
Tasnia Tahsin, Davy Weissenbacher, Demetrius Jones-Shargani, Daniel Magee, Matteo Vaiente, Graciela Gonzalez, Matthew Scotch
Named entity linking of geospatial and host metadata in GenBank for advancing biomedical research. Database J. Biol. Databases Curation 2017 (2017)
Ari Z. Klein, Abeed Sarker, Masoud Rouhizadeh, Karen O'Connor, Graciela Gonzalez
Detecting Personal Medication Intake in Twitter: An Annotated Corpus and Baseline Classification System. BioNLP (2017)
Abeed Sarker, Graciela Gonzalez
Overview of the Second Social Media Mining for Health (SMM4H) Shared Tasks at AMIA 2017. SMM4H@AMIA (2017)
Davy Weissenbacher, Travis A. Johnson, Laura Wojtulewicz, Amylou Dueck, Dona Locke, Richard J. Caselli, Graciela Gonzalez
Automatic Prediction of Linguistic Decline in Writings of Subjects with Degenerative Dementia. HLT-NAACL (2016)
Abeed Sarker, Graciela Gonzalez
Data, tools and resources for mining social media drug chatter. BioTxtM@COLING 2016 (2016)
Abbas Chokor, Abeed Sarker, Graciela Gonzalez
Mining the Web for Pharmacovigilance: the Case Study of Duloxetine and Venlafaxine. CoRR (2016)
Abeed Sarker, Graciela Gonzalez
DiegoLab16 at SemEval-2016 Task 4: Sentiment Analysis in Twitter using Centroids, Clusters, and Sentiment Lexicons. SemEval@NAACL-HLT (2016)
Graciela Gonzalez, Tasnia Tahsin, Britton C. Goodale, Anna C. Greene, Casey S. Greene
Recent Advances and Emerging Applications in Text and Data Mining for Biomedical Discovery. Briefings Bioinform. 17 (1) (2016)
Tasnia Tahsin, Davy Weissenbacher, Robert Rivera, Rachel Beard, Mari Firago, Garrick L. Wallstrom, Matthew Scotch, Graciela Gonzalez
A high-precision rule-based extraction system for expanding geospatial metadata in GenBank records. J. Am. Medical Informatics Assoc. 23 (5) (2016)
Ryan Sullivan, Abeed Sarker, Karen O'Connor, Amanda Goodin, Mark Karlsrud, Graciela Gonzalez
Finding Potentially Unsafe Nutritional Supplements from User Reviews with Topic Modeling. PSB (2016)
Davy Weissenbacher, Tasnia Tahsin, Rachel Beard, Mari Figaro, Robert Rivera, Matthew Scotch, Graciela Gonzalez
Knowledge-driven geospatial location resolution for phylogeographic models of virus migration. Bioinform. 31 (12) (2015)
Graciela Gonzalez, Chitta Baral, Jeff Kiefer, Suengchan Kim, Jieping Ye
Session Introduction. Pacific Symposium on Biocomputing (2015)
Abeed Sarker, Graciela Gonzalez
Portable automatic text classification for adverse drug reaction detection via multi-corpus training. J. Biomed. Informatics 53 (2015)
Graciela Gonzalez, Kevin Bretonnel Cohen, Robert Leaman, Casey S. Greene, Nigam Shah, Maricel G. Kann, Jieping Ye
Session introduction. Pacific Symposium on Biocomputing (2014)
Tasnia Tahsin, Robert Rivera, Rachel Beard, Rob Lauder, Davy Weissenbacher, Matthew Scotch, Garrick L. Wallstrom, Graciela Gonzalez
Natural Language Processing Methods for Enhancing Geographic Metadata for Phylogeography of Zoonotic Viruses. BioNLP@ACL (2014)
Ryan Sullivan, Robert Yao, Randa Jarar, Jeffrey Buchhalter, Graciela Gonzalez
Text Classification towards Detecting Misdiagnosis of an Epilepsy Syndrome in a Pediatric Population. AMIA (2014)
Yuqing Mao, Kimberly Van Auken, Donghui Li, Cecilia N. Arighi, Peter McQuilton, G. Thomas Hayman, Susan Tweedie, Mary L. Schaeffer, Stanley J. F. Laulederkind, Shur-Jen Wang, Julien Gobeill, Patrick Ruch, Anh Tuan Luu, Jung-Jae Kim, Jung-Hsien Chiang, Yu-De Chen, Chia-Jung Yang, Hongfang Liu, Dongqing Zhu, Yanpeng Li, Hong Yu, Ehsan Emadzadeh, Graciela Gonzalez, Jian-Ming Chen, Hong-Jie Dai, Zhiyong Lu
Overview of the gene ontology task at BioCreative IV. Database J. Biol. Databases Curation 2014 (2014)
Graciela Gonzalez, Kevin Bretonnel Cohen, Casey S. Greene, Udo Hahn, Maricel G. Kann, Robert Leaman, Nigam Shah, Jieping Ye
Session introduction. Pacific Symposium on Biocomputing (2013)
Siddhartha Jonnalagadda, Trevor Cohen, Stephen T. Wu, Graciela Gonzalez
Enhancing clinical concept extraction with distributional semantics. J. Biomed. Informatics 45 (1) (2012)
Robert Yao, Jeffrey Buchhalter, Graciela Gonzalez
Proposed Ontology for Seizure and Epilepsy. ICBO (2012)
Nate Sutton, Laura Wojtulewicz, Neel Mehta, Graciela Gonzalez
Automatic Approaches for Gene-Drug Interaction Extraction from Biomedical Text: Corpus and Comparative Evaluation. BioNLP@HLT-NAACL (2012)
Luis Tari, Phan Huy Tu, Jörg Hakenberg, Yi Chen, Tran Cao Son, Graciela Gonzalez, Chitta Baral
Incremental Information Extraction Using Relational Databases. IEEE Trans. Knowl. Data Eng. 24 (1) (2012)
Graciela Gonzalez
Biomedical Informatics in Translational Research, Hai Hu, Richard J. Mural, Michael N. Liebman (Eds.). Artech House (2008). J. Biomed. Informatics 44 (2) (2011)
Martin Krallinger, Miguel Vazquez, Florian Leitner, David Salgado, Andrew Chatr-aryamontri, Andrew G. Winter, Livia Perfetto, Leonardo Briganti, Luana Licata, Marta Iannuccelli, Luisa Castagnoli, Gianni Cesareni, Mike Tyers, Gerold Schneider, Fabio Rinaldi, Robert Leaman, Graciela Gonzalez, Sérgio Matos, Sun Kim, W. John Wilbur, Luis Mateus Rocha, Hagit Shatkay, Ashish V. Tendulkar, Shashank Agarwal, Feifan Liu, Xinglong Wang, Rafal Rak, Keith Noto, Charles Elkan, Zhiyong Lu
The Protein-Protein Interaction tasks of BioCreative III: classification/ranking of articles and linking bio-ontology concepts to full text. BMC Bioinform. 12 (S-8) (2011)
Siddhartha Jonnalagadda, Graciela Gonzalez
BioSimplify: an open source sentence simplification engine to improve recall in automatic biomedical information extraction CoRR (2011)
Robert Yao, Graciela Gonzalez
Applications for a Translational Biomedical Ontology Model. ICBO (2011)
Ehsan Emadzadeh, Siddhartha Jonnalagadda, Graciela Gonzalez
Evaluating Distributional Semantic and Feature Selection for Extracting Relationships from Biological Text. ICMLA (2) (2011)
Matthew Scotch, Indra Neil Sarkar, Changjiang Mei, Robert Leaman, Kei-Hoi Cheung, Pierina Ortiz, Ashutosh Singraur, Graciela Gonzalez
Enhancing phylogeography by improving geographical information from GenBank. J. Biomed. Informatics 44 (Supplement-1) (2011)
Jang Lee, Graciela Gonzalez
Towards Integrative Gene Prioritization in Alzheimer's Disease. Pacific Symposium on Biocomputing (2011)
Jörg Hakenberg, Martin Gerner, Maximilian Haeussler, Illés Solt, Conrad Plake, Michael Schroeder, Graciela Gonzalez, Goran Nenadic, Casey M. Bergman
The GNAT library for local and remote gene mention normalization. Bioinform. 27 (19) (2011)
Ryan Sullivan, Robert Leaman, Graciela Gonzalez
The DIEGO Lab Graph Based Gene Normalization System. ICMLA (2) (2011)
Luis Tari, Phan Huy Tu, Jörg Hakenberg, Yi Chen, Tran Cao Son, Graciela Gonzalez, Chitta Baral
GenerIE: Information extraction using database queries. ICDE (2010)
Jörg Hakenberg, Robert Leaman, Nguyen Ha Vo, Siddhartha Jonnalagadda, Ryan Sullivan, Christopher Miller, Luis Tari, Chitta Baral, Graciela Gonzalez
Efficient Extraction of Protein-Protein Interactions from Full-Text Articles. IEEE ACM Trans. Comput. Biol. Bioinform. 7 (3) (2010)
Siddhartha Jonnalagadda, Robert Leaman, Trevor Cohen, Graciela Gonzalez
A Distributional Semantics Approach to Simultaneous Recognition of Multiple Classes of Named Entities. CICLing (2010)
Robert Leaman, Laura Wojtulewicz, Ryan Sullivan, Annie Skariah, Jian Yang, Graciela Gonzalez
Towards Internet-Age Pharmacovigilance: Extracting Adverse Drug Reactions from User Posts in Health-Related Social Networks. BioNLP@ACL (2010)
Siddhartha Jonnalagadda, Graciela Gonzalez
Sentence Simplification Aids Protein-Protein Interaction Extraction CoRR (2010)
Siddhartha Jonnalagadda, Luis Tari, Jörg Hakenberg, Chitta Baral, Graciela Gonzalez
Towards Effective Sentence Simplification for Automatic Processing of Biomedical Text CoRR (2010)
Luis Tari, Jörg Hakenberg, Graciela Gonzalez, Chitta Baral
Querying Parse Tree Database of Medline Text to Synthesize User-Specific Biomolecular Networks. Pacific Symposium on Biocomputing (2009)
Siddhartha Jonnalagadda, Luis Tari, Jörg Hakenberg, Chitta Baral, Graciela Gonzalez
Towards Effective Sentence Simplification for Automatic Processing of Biomedical Text. HLT-NAACL (Short Papers) (2009)
Jörg Hakenberg, Illés Solt, Domonkos Tikk, Luis Tari, Astrid Rheinländer, Quang Long Nguyen, Graciela Gonzalez, Ulf Leser
Molecular event extraction from Link Grammar parse trees. BioNLP@HLT-NAACL (Shared Task) (2009)
Robert Leaman, Graciela Gonzalez
BANNER: An Executable Survey of Advances in Biomedical Named Entity Recognition. Pacific Symposium on Biocomputing (2008)
Jörg Hakenberg, Conrad Plake, Robert Leaman, Michael Schroeder, Graciela Gonzalez
Inter-species normalization of gene mentions with GNAT. ECCB (2008)
Graciela Gonzalez, Juan C. Uribe, Luis Tari, Colleen Brophy, Chitta Baral
Mining Gene-Disease Relationships from Biomedical Literature: Weighting Proteinprotein Interactions and Connectivity. Pacific Symposium on Biocomputing (2007)
Graciela Gonzalez, Janaka Balasooriya
Web Service Orchestration for Bioinformatics Systems: Challenges and Current Workflow Definition Approaches. ICWS (2007)
Luis Tari, Phan Huy Tu, Barry Lumpkin, Robert Leaman, Graciela Gonzalez, Chitta Baral
Passage Relevancy Through Semantic Relatedness. TREC (2007)
Graciela Gonzalez
A systematic approach to active and cooperative learning in CS1 and its effects on CS2. SIGCSE (2006)
Luis Tari, Graciela Gonzalez, Robert Leaman, Shawn Nikkila, Ryan Wendt, Chitta Baral
ASU at TREC 2006 Genomics Track. TREC (2006)
Lian Yu, Syed Toufeeq Ahmed, Graciela Gonzalez, Brendan Logsdon, Mutsumi Nakamura, Shawn Nikkila, Kalpesh Shah, Luis Tari, Ryan Wendt, Amanda Zeigler, Chitta Baral
Genomic Information Retrieval Through Selective Extraction and Tagging by the ASU-BioAL Group. TREC (2005)
Graciela Gonzalez, Chitta Baral, Michael Gelfond
Alan: An Action Language For Modelling Non-Markovian Domains. Stud Logica 79 (1) (2005)
Graciela Gonzalez, Chitta Baral, Peter A. Cooper
Modeling Multimedia Displays Using Action Based Temporal Logic. VDB (2002)
Chitta Baral, Graciela Gonzalez
Specifying Generic Multimedia 3D Visualizations and Temporal Presentations from Database Queries. ICMCS, Vol. 1 (1999)
Chitta Baral, Graciela Gonzalez, Tran Cao Son
Design and Implementation of Display Specification for Multimedia Answers. ICDE (1998)
Chitta Baral, Graciela Gonzalez, Tran Cao Son
Conceptual Modeling and Querying in Multimedia Databases. Multim. Tools Appl. 7 (1/2) (1998)
Graciela Gonzalez
Intervals Help to Design an Imaging System. Reliab. Comput. 4 (1) (1998)
Chitta Baral, Graciela Gonzalez, Amarendra Nandigam
SQL+D: Extended Display Capabilities for Multimedia Database Queries. ACM Multimedia (1998)