Patrick Ruch

ORCID

Publication Activity (10 Years)

Years Active: 1999-2023
Publications (10 Years): 40

Top Venues

Database J. Biol. Databases Curation

TREC

CLEF (Working Notes)

MIE

Publications

Déborah Caucheteur, Zoë May Pendlington, Paola Roncaglia, Julien Gobeill, Luc Mottin, Nicolas Matentzoglu, Donat Agosti, David Osumi-Sutherland, Helen E. Parkinson, Patrick Ruch
COVoc and COVTriage: novel resources to support literature triage. Bioinform. 39 (1) (2023)
Emilie Pasche, Anaïs Mottaz, Julien Gobeill, Pierre-André Michel, Déborah Caucheteur, Nona Naderi, Patrick Ruch
Assessing the use of supplementary materials to improve genomic variant discovery. Database J. Biol. Databases Curation 2023 (2023)
Luc Mottin, Jean-Philippe Goldman, Christoph Jäggli, Rita Achermann, Julien Gobeill, Julien Knafou, Julien Ehrsam, Alexandre Wicky, Camille L. Gerard, Tanja Schwenk, Mélinda Charrier, Petros Tsantoulis, Christian Lovis, Alexander B. Leichtle, Michael Kiessling, Olivier Michielin, Sylvain Pradervand, Vasiliki Foufi, Patrick Ruch
Multilingual RECIST classification of radiology reports using supervised learning. Frontiers Digit. Health 5 (2023)
Nona Naderi, Anaïs Mottaz, Douglas Teodoro, Patrick Ruch
Analyzing the Information Content of Text-Based Files in Supplementary Materials of Biomedical Literature. MIE (2022)
Jean-Philippe Goldman, Luc Mottin, Jamil Zaghir, Daniel Keszthelyi, Belinda Lokaj, Hugues Turbé, Julien Gobeill, Patrick Ruch, Julien Ehrsam, Christian Lovis
Classification of Oncology Treatment Responses from French Radiology Reports with Supervised Machine Learning. MIE (2022)
Anaïs Mottaz, Emilie Pasche, Pierre-André Michel, Luc Mottin, Douglas Teodoro, Patrick Ruch
Designing an Optimal Expansion Method to Improve the Recall of a Genomic Variant Curation-Support Service. MIE (2022)
Luc Mottin, Jean-Philippe Goldman, Christoph Jäggli, Rita Achermann, Julien Gobeill, Julien Knafou, Julien Ehrsam, Alexandre Wicky, Camille L. Gerard, Tanja Schwenk, Mélinda Charrier, Petros Tsantoulis, Christian Lovis, Alexander B. Leichtle, Michael Kiessling, Olivier Michielin, Sylvain Pradervand, Vasiliki Foufi, Patrick Ruch
Classification of oncology treatment responses from radiology reports with supervised machine learning. AMIA (2022)
Peter Cornwell, Donat Agosti, Laurence Benichou, Jose Benito Gonzalez Lopez, Madeleine Herren, Patrick Ruch
Progress With Improving Preservation and Reuse of Scientific Research Data. iPRES (2021)
Déborah Caucheteur, Emilie Pasche, Luc Mottin, Anaïs Mottaz, Julien Gobeill, Patrick Ruch
SIB Text Mining at TREC Clinical Trials 2021. TREC (2021)
Nona Naderi, Julien Knafou, Jenny Copara, Patrick Ruch, Douglas Teodoro
Ensemble of Deep Masked Language Models for Effective Named Entity Recognition in Health and Life Science Corpora. Frontiers Res. Metrics Anal. 6 (2021)
Alex Bateman, Maria Jesus Martin, Sandra E. Orchard, Michele Magrane, Rahat Agivetova, Shadab Ahmad, Emanuele Alpi, Emily H. Bowler-Barnett, Ramona Britto, Borisas Bursteinas, Hema Bye-A-Jee, Ray Coetzee, Austra Cukura, Alan W. Sousa da Silva, Paul Denny, Tunca Dogan, Thankgod Ebenezer, Jun Fan, Leyla Jael García Castro, Penelope Garmiri, George E. Georghiou, Leonardo Gonzales, Emma Hatton-Ellis, Abdulrahman Hussein, Alexandr Ignatchenko, Giuseppe Insana, Rizwan Ishtiaq, Petteri Jokinen, Vishal Joshi, Dushyanth Jyothi, Antonia Lock, Rodrigo Lopez, Aurelien Luciani, Jie Luo, Yvonne Lussi, Alistair MacDougall, Fábio Madeira, Mahdi Mahmoudy, Manuela Menchi, Alok Mishra, Katie Moulang, Andrew Nightingale, Carla Susana Oliveira, Sangya Pundir, Guoying Qi, Shriya Raj, Daniel Rice, Milagros Rodríguez-López, Rabie Saidi, Joseph Sampson, Tony Sawford, Elena Speretta, Edward Turner, Nidhi Tyagi, Preethi Vasudev, Vladimir Volynkin, Kate Warner, Xavier Watkins, Rossana Zaru, Hermann Zellner, Alan Bridge, Sylvain Poux, Nicole Redaschi, Lucila Aimo, Ghislaine Argoud-Puy, Andrea H. Auchincloss, Kristian B. Axelsen, Parit Bansal, Delphine Baratin, Marie-Claude Blatter, Jerven T. Bolleman, Emmanuel Boutet, Lionel Breuza, Cristina Casals-Casas, Edouard De Castro, Kamal Chikh Echioukh, Elisabeth Coudert, Béatrice A. Cuche, Mikael Doche, Dolnide Dornevil, Anne Estreicher, Maria Livia Famiglietti, Marc Feuermann, Elisabeth Gasteiger, Sebastien Gehant, Vivienne Baillie Gerritsen, Arnaud Gos, Nadine Gruaz-Gumowski, Ursula Hinz, Chantal Hulo, Nevila Hyka-Nouspikel, Florence Jungo, Guillaume Keller, Arnaud Kerhornou, Vicente Lara, Philippe Le Mercier, Damien Lieberherr, Thierry Lombardot, Xavier Martin, Patrick Masson, Anne Morgat, Teresa Batista Neto, Salvo Paesano, Ivo Pedruzzi, Sandrine Pilbout, Lucille Pourcel, Monica Pozzato, Manuela Pruess, Catherine Rivoire, Christian J. A. Sigrist, Karin Sonesson, Andre Stutz, Shyamala Sundaram, Michael Tognolli, Laure Verbregue, Cathy H. Wu, Cecilia N. Arighi, Leslie Arminski, Chuming Chen, Yongxing Chen, John S. Garavelli, Hongzhan Huang, Kati Laiho, Peter B. McGarvey, Darren A. Natale, Karen Ross, C. R. Vinayaka, Qinghua Wang, Yuqi Wang, Lai-Su Yeh, Jian Zhang, Patrick Ruch, Douglas Teodoro
UniProt: the universal protein knowledgebase in 2021. Nucleic Acids Res. 49 (Database-Issue) (2021)
Julien Gobeill, Déborah Caucheteur, Pierre-André Michel, Luc Mottin, Emilie Pasche, Patrick Ruch
SIB Literature Services: RESTful customizable search engines in biomedical literature, enriched with automatically mapped biomedical concepts. Nucleic Acids Res. 48 (Webserver-Issue) (2020)
Jiayuan He, Dat Quoc Nguyen, Saber A. Akhondi, Christian Druckenbrodt, Camilo Thorne, Ralph Hoessel, Zubair Afzal, Zenan Zhai, Biaoyan Fang, Hiyori Yoshikawa, Ameer Albahem, Jingqi Wang, Yuankai Ren, Zhi Zhang, Yaoyun Zhang, Mai Hoang Dao, Pedro Ruas, Andre Lamurias, Francisco M. Couto, Jenny Copara, Nona Naderi, Julien Knafou, Patrick Ruch, Douglas Teodoro, Daniel M. Lowe, John Mayfield, Abdullatif Köksal, Hilal Dönmez, Elif Özkirimli, Arzucan Özgür, Darshini Mahendran, Gabrielle Gurdin, Nastassja Lewinski, Christina Tang, Bridget T. McInnes, C. S. Malarkodi, Pattabhi Rk Rao, Sobha Lalitha Devi, Lawrence Cavedon, Trevor Cohn, Timothy Baldwin, Karin Verspoor
An Extended Overview of the CLEF 2020 ChEMU Lab: Information Extraction of Chemical Reactions from Patents. CLEF (Working Notes) (2020)
Déborah Caucheteur, Julien Gobeill, Anaïs Mottaz, Emilie Pasche, Pierre-André Michel, Luc Mottin, Daniel J. Stekhoven, Valérie Barbié, Patrick Ruch
Text-Mining Services of the Swiss Variant Interpretation Platform for Oncology. MIE (2020)
Jenny Copara, Julien Knafou, Nona Naderi, Claudia Moro, Patrick Ruch, Douglas Teodoro
Contextualized French Language Models for Biomedical Named Entity Recognition. JEP-TALN-RECITAL (DEFT) (2020)
Jenny Copara, Nona Naderi, Julien Knafou, Patrick Ruch, Douglas Teodoro
Named entity recognition in chemical patents using ensemble of contextual language models. CoRR (2020)
Jenny Copara, Nona Naderi, Julien Knafou, Patrick Ruch, Douglas Teodoro
Named Entity Recognition in Chemical Patents using Ensemble of Contextual Language Models. CLEF (Working Notes) (2020)
Julien Knafou, Matthew Jeffryes, Sohrab Ferdowsi, Patrick Ruch
SIB Text Mining at TREC 2020 Deep Learning Track. TREC (2020)
Julien Knafou, Nona Naderi, Jenny Copara, Douglas Teodoro, Patrick Ruch
BiTeM at WNUT 2020 Shared Task-1: Named Entity Recognition over Wet Lab Protocols using an Ensemble of Contextual Language Models. W-NUT@EMNLP (2020)
Douglas Teodoro, Julien Knafou, Nona Naderi, Emilie Pasche, Julien Gobeill, Cecilia N. Arighi, Patrick Ruch
UPCLASS: a deep learning-based classifier for UniProtKB entry publications. Database J. Biol. Databases Curation 2020 (2020)
Julien Gobeill, Patrick Ruch, Rodolphe Meyer
Machine Learning for Automatic Encoding of French Electronic Medical Records: Is More Data Better? MIE (2020)
András Hatos, Borbála Hajdu-Soltész, Alexander Miguel Monzon, Nicolas Palopoli, Lucía Álvarez, Burcu Aykaç Fas, Claudio Bassot, Guillermo I. Benítez, Martina Bevilacqua, Anastasia Chasapi, Lucía B. Chemes, Norman E. Davey, Radoslav Davidovic, A. Keith Dunker, Arne Elofsson, Julien Gobeill, Nicolás S. González Foutel, Govindarajan Sudha, Mainak Guharoy, Tamás Horváth, Valentin Iglesias, Andrey V. Kajava, Orsolya P. Kovács, John Lamb, Matteo Lambrughi, Tamas Lazar, Jeremy Y. Leclercq, Emanuela Leonardi, Sandra Macedo-Ribeiro, Mauricio Macossay-Castillo, Emiliano Maiani, José A. Manso, Cristina Marino Buslje, Elizabeth Martínez-Pérez, Bálint Mészáros, Ivan Micetic, Giovanni Minervini, Nikoletta Murvai, Marco Necci, Christos A. Ouzounis, Mátyás Pajkos, Lisanna Paladin, Rita Pancsa, Elena Papaleo, Gustavo D. Parisi, Emilie Pasche, Pedro J. Barbosa Pereira, Vasilis J. Promponas, Jordi Pujols, Federica Quaglia, Patrick Ruch, Marco Salvatore, Éva Schád, Beáta Szabó, Tamás Szaniszló, Stella Tamana, Ágnes Tantos, Nevena Veljkovic, Salvador Ventura, Wim F. Vranken, Zsuzsanna Dosztányi, Peter Tompa, Silvio C. E. Tosatto, Damiano Piovesan
DisProt: intrinsic protein disorder annotation in 2020. Nucleic Acids Res. 48 (Database-Issue) (2020)
Emilie Pasche, Déborah Caucheteur, Luc Mottin, Anaïs Mottaz, Julien Gobeill, Patrick Ruch
SIB Text Mining at TREC Precision Medicine 2020. TREC (2020)
Paul Van Rijen, Douglas Teodoro, Nona Naderi, Luc Mottin, Julien Knafou, Matt Jeffryes, Patrick Ruch
A Data-Driven Approach for Measuring the Severity of the Signs of Depression using Reddit Posts. CLEF (Working Notes) (2019)
Nona Naderi, Julien Gobeill, Douglas Teodoro, Emilie Pasche, Patrick Ruch
A Baseline Approach for Early Detection of Signs of Anorexia and Self-harm in Reddit Posts. CLEF (Working Notes) (2019)
Julien Knafou, Matt Jeffryes, Luc Mottin, Douglas Teodoro, Patrick Ruch
SIB Text Mining at TREC 2019 Deep Learning Track: Working Note. TREC (2019)
Déborah Caucheteur, Emilie Pasche, Julien Gobeill, Anaïs Mottaz, Luc Mottin, Patrick Ruch
Designing retrieval models to contrast precision-driven ad hoc search vs. recall-driven treatment extraction in Precision Medicine. TREC (2019)
Julien Gobeill, Emilie Pasche, Patrick Ruch
Retrieving the Evidence of a Free Text Annotation in a Scientific Article: A Data Free Approach. CICLing (1) (2019)
Aurore Britan, Isabelle Cusin, Valérie Hinard, Luc Mottin, Emilie Pasche, Julien Gobeill, Valentine Rech de Laval, Anne Gleizes, Daniel Dinis Teixeira, Pierre-André Michel, Patrick Ruch, Pascale Gaudet
Accelerating annotation of articles via automated approaches: evaluation of the neXtA5 curation-support tool by neXtProt. Database J. Biol. Databases Curation 2018 (2018)
Julien Gobeill, Patrick Ruch
Instance-based Learning for ICD10 Categorization. CLEF (Working Notes) (2018)
Julien Gobeill, Pascale Gaudet, Daniel Dopp, Adam Morrone, Indika Kahanda, Yi-Yu Hsu, Chih-Hsuan Wei, Zhiyong Lu, Patrick Ruch
Overview of the BioCreative VI text-mining services for Kinome Curation Track. Database J. Biol. Databases Curation 2018 (2018)
Douglas Teodoro, Luc Mottin, Julien Gobeill, Arnaud Gaudinat, Thérèse Vachon, Patrick Ruch
Improving average ranking precision in user searches for biomedical research datasets. Database J. Biol. Databases Curation 2017 (2017)
Emilie Pasche, Julien Gobeill, Luc Mottin, Anaïs Mottaz, Douglas Teodoro, Paul Van Rijen, Patrick Ruch
Customizing a Variant Annotation-Support Tool: an Inquiry into Probability Ranking Principles for TREC Precision Medicine. TREC (2017)
Douglas Teodoro, Luc Mottin, Julien Gobeill, Arnaud Gaudinat, Thérèse Vachon, Patrick Ruch
Improving average ranking precision in user searches for biomedical research datasets. CoRR (2017)
Arnaud Gaudinat, Jonas Beausire, Megan Fuss, Elisa Banfi, Julien Gobeill, Patrick Ruch
Global picture of OAI-PMH repositories through the analysis of 6 key open archive meta-catalogs. CoRR (2017)
Luc Mottin, Emilie Pasche, Julien Gobeill, Valentine Rech de Laval, Anne Gleizes, Pierre-André Michel, Amos Bairoch, Pascale Gaudet, Patrick Ruch
Triage by ranking to support the curation of protein interactions. Database J. Biol. Databases Curation 2017 (2017)
Célia Boyer, Ljiljana Dolamic, Patrick Ruch, Gilles Falquet
Effect of the Named Entity Recognition and Sliding Window on the HONcode Automated Detection of HONcode Criteria for Mass Health Online Content. HEALTHINF (2016)
Célia Boyer, Allan Hanbury, Patrick Ruch, Gilles Falquet
Tools to Retrieve Reliable Health Information on the Internet - Improvements of the Automated Detection of HONcode Criteria for Mass Health Online Content. EPS (2016)
Luc Mottin, Julien Gobeill, Emilie Pasche, Pierre-André Michel, Isabelle Cusin, Pascale Gaudet, Patrick Ruch
: accelerating annotation of articles via automated approaches in neXtProt. Database J. Biol. Databases Curation 2016 (2016)
Luc Mottin, Julien Gobeill, Anaïs Mottaz, Emilie Pasche, Arnaud Gaudinat, Patrick Ruch
BiTeM at CLEF eHealth Evaluation Lab 2016 Task 2: Multilingual Information Extraction. CLEF (Working Notes) (2016)
Julien Gobeill, Arnaud Gaudinat, Emilie Pasche, Dina Vishnyakova, Pascale Gaudet, Amos Bairoch, Patrick Ruch
Deep Question Answering for protein annotation. Database J. Biol. Databases Curation 2015 (2015)
Julien Gobeill, Arnaud Gaudinat, Patrick Ruch
Instance-Based Learning for Tweet Monitoring and Categorization. CLEF (2015)
Julien Gobeill, Arnaud Gaudinat, Patrick Ruch
Exploiting incoming and outgoing citations for improving Information Retrieval in the TREC 2015 Clinical Decision Support Track. TREC (2015)
Julien Gobeill, Emilie Pasche, Dina Vishnyakova, Patrick Ruch
Closing the loop: from paper to protein annotation using supervised Gene Ontology classification. Database J. Biol. Databases Curation 2014 (2014)
Dina Vishnyakova, Julien Gobeill, Fatma Oezdemir-Zaech, Olivier Kreim, Thérèse Vachon, Thierry Cladé, Xavier Haenning, Dmitri Mikhailov, Patrick Ruch
Electronic Processing of Informed Consents in a Global Pharmaceutical Company Environment. MIE (2014)
Julien Gobeill, Arnaud Gaudinat, Patrick Ruch
Instance-based Learning for Tweet Categorization in CLEF RepLab 2014. CLEF (Working Notes) (2014)
Julien Gobeill, Arnaud Gaudinat, Emilie Pasche, Patrick Ruch
Full-texts representation with Medical Subject Headings, and co-citations network rerank- ing strategies for TREC 2014 Clinical Decision Support Track. TREC (2014)
Emilie Pasche, Julien Gobeill, Olivier Kreim, Fatma Oezdemir-Zaech, Thérèse Vachon, Christian Lovis, Patrick Ruch
Development and tuning of an original search engine for patent libraries in medicinal chemistry. BMC Bioinform. 15 (S-1) (2014)
Yuqing Mao, Kimberly Van Auken, Donghui Li, Cecilia N. Arighi, Peter McQuilton, G. Thomas Hayman, Susan Tweedie, Mary L. Schaeffer, Stanley J. F. Laulederkind, Shur-Jen Wang, Julien Gobeill, Patrick Ruch, Anh Tuan Luu, Jung-Jae Kim, Jung-Hsien Chiang, Yu-De Chen, Chia-Jung Yang, Hongfang Liu, Dongqing Zhu, Yanpeng Li, Hong Yu, Ehsan Emadzadeh, Graciela Gonzalez, Jian-Ming Chen, Hong-Jie Dai, Zhiyong Lu
Overview of the gene ontology task at BioCreative IV. Database J. Biol. Databases Curation 2014 (2014)
Niraj Aswani, Thomas Beckers, Erich Birngruber, Célia Boyer, Andreas Burner, Jakub Bystron, Khalid Choukri, Sarah Cruchet, Hamish Cunningham, Jan Dedek, Ljiljana Dolamic, René Donner, Sebastian Dungs, Ivan Eggel, Antonio Foncubierta-Rodríguez, Norbert Fuhr, Adam Funk, Alba Garcia Seco de Herrera, Arnaud Gaudinat, Georgi Georgiev, Julien Gobeill, Lorraine Goeuriot, Paz Gomez, Robert Mark Greenwood, Manfred Gschwandtner, Allan Hanbury, Jan Hajic, Jaroslava Hlavácová, Markus Holzer, Gareth J. F. Jones, Blanca Jordan, Matthias Jordan, Klemens Kaderk, Franz Kainberger, Liadh Kelly, Sascha Kriewel, Marlene Kritz, Georg Langs, Nolan Lawson, Dimitrios Markonis, Iván Martínez, Vassil Momtchev, Alexandre Masselot, Hélène Mazo, Henning Müller, João R. M. Palotti, Pavel Pecina, Konstantin Pentchev, Deyan Peychev, Natalia Pletneva, Diana Pottecher, Angus Roberts, Patrick Ruch, Alexander Sachs, Matthias Samwald, Priscille Schneller, Veronika Stefanov, Miguel Angel Tinte, Zdenka Uresová, Alejandro Vargas, Dina Vishnyakova
Khresmoi - Multilingual Semantic Search of Medical Text and Images. MedInfo (2013)
Anne-Lise Veuthey, Alan Bridge, Julien Gobeill, Patrick Ruch, Johanna R. McEntyre, Lydie Bougueleret, Ioannis Xenarios
Application of text-mining for updating protein post-translational modification annotation in UniProtKB. BMC Bioinform. 14 (2013)
Dina Vishnyakova, Julien Gobeill, Patrick Ruch
Using a Question-Answering Approach in Machine Reading Task of Biomedical Texts about the Alzheimer Disease. CLEF (Working Notes) (2013)
Dina Vishnyakova, Emilie Pasche, Christian Lovis, Patrick Ruch
Utilization of Ontology Look-Up Services in Information Retrieval for Biomedical Literature. EFMI-STC (2013)
Emilie Pasche, Julien Gobeill, Dina Vishnyakova, Patrick Ruch, Christian Lovis
Use of Controlled Vocabularies to Improve Biomedical Information Retrieval Tasks. MedInfo (2013)
Julien Gobeill, Emilie Pasche, Dina Vishnyakova, Patrick Ruch
Managing the data deluge: data-driven GO category assignment improves while complexity of functional annotation increases. Database J. Biol. Databases Curation 2013 (2013)
Dina Vishnyakova, Emilie Pasche, Douglas Teodoro, Christian Lovis, Patrick Ruch
Pathogens and Gene Product Normalization in the Biomedical Literature. EFMI-STC (2012)
Emilie Pasche, Julien Gobeill, Douglas Teodoro, Arnaud Gaudinat, Dina Vishnyakova, Christian Lovis, Patrick Ruch
An advanced search engine for patent analytics in medicinal chemistry. MIE (2012)
Dina Vishnyakova, Emilie Pasche, Julien Gobeill, Arnaud Gaudinat, Christian Lovis, Patrick Ruch
Classification and Prioritization of Biomedical Literature for the Comparative Toxicogenomics Database. MIE (2012)
Dina Vishnyakova, Emilie Pasche, Patrick Ruch
Using binary classification to prioritize and curate articles for the Comparative Toxicogenomics Database. Database J. Biol. Databases Curation 2012 (2012)
Julien Gobeill, Patrick Ruch
BiTeM Site Report for the Claims to Passage Task in CLEF-IP 2012. CLEF (Online Working Notes/Labs/Workshop) (2012)
Emilie Pasche, Julien Gobeill, Douglas Teodoro, Arnaud Gaudinat, Dina Vishnyakova, Christian Lovis, Patrick Ruch
A User-Friendly Tool for Medical-Related Patent Retrieval. EFMI-STC (2012)
Douglas Teodoro, Rémy Choquet, Daniel Schober, Giovanni Mels, Emilie Pasche, Patrick Ruch, Christian Lovis
Interoperability Driven Integration of Biomedical Data Sources. MIE (2011)
Zhiyong Lu, Hung-Yu Kao, Chih-Hsuan Wei, Minlie Huang, Jingchen Liu, Cheng-Ju Kuo, Chun-Nan Hsu, Richard Tzong-Han Tsai, Hong-Jie Dai, Naoaki Okazaki, Han-Cheol Cho, Martin Gerner, Illés Solt, Shashank Agarwal, Feifan Liu, Dina Vishnyakova, Patrick Ruch, Martin Romacker, Fabio Rinaldi, Sanmitra Bhattacharya, Padmini Srinivasan, Hongfang Liu, Manabu Torii, Sérgio Matos, David Campos, Karin Verspoor, Kevin M. Livingston, W. John Wilbur
The gene normalization task in BioCreative III. BMC Bioinform. 12 (S-8) (2011)
Julien Gobeill, Arnaud Gaudinat, Patrick Ruch, Emilie Pasche, Douglas Teodoro, Dina Vishnyakova
BiTeM Group Report for TREC Chemical IR Track 2011. TREC (2011)
Emilie Pasche, Julien Gobeill, Douglas Teodoro, Dina Vishnyakova, Arnaud Gaudinat, Patrick Ruch, Christian Lovis
Using Multimodal Mining to Drive Clinical Guidelines Development. MIE (2011)
Julien Gobeill, Arnaud Gaudinat, Patrick Ruch, Emilie Pasche, Douglas Teodoro, Dina Vishnyakova
BiTeM Group Report for TREC Medical Records Track 2011. TREC (2011)
Patrick Ruch
Literature-based Discovery. J. Assoc. Inf. Sci. Technol. 61 (7) (2010)
Douglas Teodoro, Emilie Pasche, Dina Vishnyakova, Julien Gobeill, Patrick Ruch, Christian Lovis
Automatic IPC Encoding and Novelty Tracking for Effective Patent Mining. NTCIR (2010)
Julien Gobeill, Arnaud Gaudinat, Patrick Ruch, Emilie Pasche, Douglas Teodoro, Dina Vishnyakova
BiTeM site Report for TREC Chemistry 2010: Impact of Citations Feeback for Patent Prior Art Search and Chemical Compounds Expansion for Ad Hoc Retrieval. TREC (2010)
Douglas Teodoro, Julien Gobeill, Emilie Pasche, Dina Vishnyakova, Patrick Ruch, Christian Lovis
Automatic Prior Art Searching and Patent Encoding at CLEF-IP '10. CLEF (Notebook Papers/LABs/Workshops) (2010)
Rémy Choquet, Douglas Teodoro, Giovanni Mels, Ariane Assélé Kama, Emilie Pasche, Patrick Ruch, Christian Lovis, Marie-Christine Jaulent
Partage de Données Biomédicales sur le Web Sémantique. WSM@IC (2010)
Douglas Teodoro, Rémy Choquet, Emilie Pasche, Julien Gobeill, Christel Daniel, Patrick Ruch, Christian Lovis
Biomedical Data Management: A Proposal Framework. MIE (2009)
Susanne M. Humphrey, Aurélie Névéol, Allen C. Browne, Julien Gobeill, Patrick Ruch, Stéfan Jacques Darmoni
Comparing a rule-based versus statistical system for automatic categorization of MEDLINE documents according to biomedical specialty. J. Assoc. Inf. Sci. Technol. 60 (12) (2009)
Julien Gobeill, Emilie Pasche, Douglas Teodoro, Patrick Ruch
Simple Pre and Post Processing Strategies for Patent Searching in CLEF Intellectual Property Track 2009. CLEF (1) (2009)
Julien Gobeill, Douglas Theodoro, Patrick Ruch
Exploring a Wide Range of Simple Pre and Post Processing Strategies for Patent Searching in CLEF IP 2009. CLEF (Working Notes) (2009)
Emilie Pasche, Douglas Teodoro, Julien Gobeill, Patrick Ruch, Christian Lovis
Automatic Medical Knowledge Acquisition Using Question-Answering. MIE (2009)
Julien Gobeill, Douglas Teodoro, Emilie Pasche, Patrick Ruch
Report on the TREC 2009 Experiments: Chemical IR Track. TREC (2009)
Emilie Pasche, Douglas Teodoro, Julien Gobeill, Patrick Ruch, Christian Lovis
QA-driven Guidelines Generation for Bacteriotherapy. AMIA (2009)
Julien Gobeill, Douglas Theodoro, Emilie Pasche, Patrick Ruch
Taking Benefit of Query and Document Expansion using MeSH Descriptors in Medical ImageCLEF 2009. CLEF (Working Notes) (2009)
Patrick Ruch, Julien Gobeill, Imad Tbahriti, Antoine Geissbühler
From Episodes of Care to Diagnosis Codes: Automatic Text Categorization for Medico-Economic Encoding. AMIA (2008)
Anaïs Mottaz, Yum Lina Yip, Patrick Ruch, Anne-Lise Veuthey
Mapping proteins to disease terminologies: from UniProt to MeSH. BMC Bioinform. 9 (S-5) (2008)
Julien Gobeill, Imad Tbahriti, Frédéric Ehrler, Anaïs Mottaz, Anne-Lise Veuthey, Patrick Ruch
Gene Ontology density estimation and discourse analysis for automatic GeneRiF extraction. BMC Bioinform. 9 (S-3) (2008)
Patrick Ruch, Julien Gobeill, Christian Lovis, Antoine Geissbühler
Automatic medical encoding with SNOMED categories. BMC Medical Informatics Decis. Mak. 8 (S-1) (2008)
Julien Gobeill, Patrick Ruch, Xin Zhou
Text-only Cross-language Image Search at Medical ImageCLEF 2008. CLEF (Working Notes) (2008)
Julien Gobeill, Patrick Ruch, Xin Zhou
Query and Document Expansion with Medical Subject Headings Terms at Medical Imageclef 2008. CLEF (2008)
Julien Gobeill, Patrick Ruch
First Participation of University and Hospitals of Geneva to Domain-Specific Track in CLEF 2008. CLEF (Working Notes) (2008)
Patrick Ruch, Antoine Geissbühler, Julien Gobeill, Frédéric Lisacek, Imad Tbahriti, Anne-Lise Veuthey, Alan R. Aronson
Using Discourse Analysis to Improve Text Categorization in MEDLINE. MedInfo (2007)
Xin Zhou, Julien Gobeill, Patrick Ruch, Henning Müller
University and Hospitals of Geneva at ImageCLEF 2007. CLEF (Working Notes) (2007)
Julien Gobeill, Imad Tbahriti, Frédéric Ehrler, Patrick Ruch
Vocabulary-Driven Passage Retrieval for Question-Answering in Genomics. TREC (2007)
Xin Zhou, Julien Gobeill, Patrick Ruch, Henning Müller
University and Hospitals of Geneva Participating at ImageCLEF 2007. CLEF (2007)
Anaïs Mottaz, Yum Lina Yip, Patrick Ruch, Anne-Lise Veuthey
Mapping protein information to disease terminologies. J. Integr. Bioinform. 4 (3) (2007)
Frédéric Ehrler, Patrick Ruch, Antoine Geissbühler, Christian Lovis
Challenges and Methodology for Indexing the Computerized Patient Record. MedInfo (2007)
Robert H. Baud, Werner Ceusters, Patrick Ruch, Anne-Marie Rassinoux, Christian Lovis, Antoine Geissbühler
Reconciliation of Ontology and Terminology to Cope with Linguistics. MedInfo (2007)
Jimison Iavindrasana, Adrien Depeursinge, Patrick Ruch, Stéphane Spahni, Antoine Geissbühler, Henning Müller
Design of a Decentralized Reusable Research Database Architecture to Support Data Acquisition in Large Research Projects. MedInfo (2007)
Frédéric Ehrler, Patrick Ruch
Unsupervised Documents Categorization Using New Threshold-Sensitive Weighting Technique. AIME (2007)
Patrick Ruch, Célia Boyer, Christine Chichester, Imad Tbahriti, Antoine Geissbühler, Paul Fabry, Julien Gobeill, Violaine Pillet, Dietrich Rebholz-Schuhmann, Christian Lovis, Anne-Lise Veuthey
Using argumentation to extract key sentences from biomedical abstracts. Int. J. Medical Informatics 76 (2-3) (2007)
Dina Demner-Fushman, Susanne M. Humphrey, Nicholas C. Ide, Russell F. Loane, James G. Mork, Patrick Ruch, Miguel E. Ruiz, Lawrence H. Smith, W. John Wilbur, Alan R. Aronson
Combining Resources to Find Answers to Biomedical Questions. TREC (2007)
Imad Tbahriti, Anne-Lise Veuthey, Patrick Ruch, Julien Gobeill
Recherche d'information et analyse bibliographique appliquées à la mise à jour automatique de Swiss-Prot. CORIA (2007)
Samir Abdou, Patrick Ruch, Jacques Savoy
Recherche d'information dans MEDLINE. Document Numérique 10 (1) (2007)
Patrick Ruch, Frédéric Ehrler, Julien Gobeill, Imad Tbahriti, Antonio Jimeno-Yepes
Report on the TREC 2006 Experiment: Genomics Track. TREC (2006)

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Patrick Ruch