Olivier Michielin

Publication Activity (10 Years)

Years Active: 2003-2023
Publications (10 Years): 10

Top Topics

Energy Landscape

High Throughput

Supervised Machine Learning

Top Venues

Nucleic Acids Res.

J. Chem. Inf. Model.

IEEE ACM Trans. Comput. Biol. Bioinform.

Publications

Luc Mottin, Jean-Philippe Goldman, Christoph Jäggli, Rita Achermann, Julien Gobeill, Julien Knafou, Julien Ehrsam, Alexandre Wicky, Camille L. Gerard, Tanja Schwenk, Mélinda Charrier, Petros Tsantoulis, Christian Lovis, Alexander B. Leichtle, Michael Kiessling, Olivier Michielin, Sylvain Pradervand, Vasiliki Foufi, Patrick Ruch
Multilingual RECIST classification of radiology reports using supervised learning. Frontiers Digit. Health 5 (2023)
Marine Bugnon, Mathilde Goullieux, Ute F. Röhrig, Marta A. S. Perez, Antoine Daina, Olivier Michielin, Vincent Zoete
SwissParam 2023: A Modern Web-Based Tool for Efficient Small Molecule Parametrization. J. Chem. Inf. Model. 63 (21) (2023)
Alessandro Cuozzo, Antoine Daina, Marta A. S. Perez, Olivier Michielin, Vincent Zoete
SwissBioisostere 2021: updated structural, bioactivity and physicochemical data delivered by a reshaped web interface. Nucleic Acids Res. 50 (D1) (2022)
Luc Mottin, Jean-Philippe Goldman, Christoph Jäggli, Rita Achermann, Julien Gobeill, Julien Knafou, Julien Ehrsam, Alexandre Wicky, Camille L. Gerard, Tanja Schwenk, Mélinda Charrier, Petros Tsantoulis, Christian Lovis, Alexander B. Leichtle, Michael Kiessling, Olivier Michielin, Sylvain Pradervand, Vasiliki Foufi, Patrick Ruch
Classification of oncology treatment responses from radiology reports with supervised machine learning. AMIA (2022)
Jean Louis Raisaro, Juan Ramón Troncoso-Pastoriza, Sylvain Pradervand, Michel A. Cuendet, Mickaël Misbach, João Sá Sousa, Francesco Marino, Nicolas Freundler, Nicolas Rosat, David Cavin, Alexander B. Leichtle, Jacques Fellay, Olivier Michielin, Jean-Pierre Hubaux
SPHN/PHRT - MedCo in Action: Empowering the Swiss Molecular Tumor Board with Privacy-Preserving and Real-Time Patient Discovery. MIE (2020)
Erica Tavazzi, Camille L. Gerard, Olivier Michielin, Alexandre Wicky, Roberto Gatta, Michel A. Cuendet
A Process Mining Approach to Statistical Analysis: Application to a Real-World Advanced Melanoma Dataset. ICPM Workshops (2020)
Antoine Daina, Olivier Michielin, Vincent Zoete
SwissTargetPrediction: updated data and new features for efficient prediction of protein targets of small molecules. Nucleic Acids Res. 47 (Webserver-Issue) (2019)
Jean Louis Raisaro, Juan Ramón Troncoso-Pastoriza, Mickaël Misbach, João Sá Sousa, Sylvain Pradervand, Edoardo Missiaglia, Olivier Michielin, Bryan Ford, Jean-Pierre Hubaux
MedCo: Enabling Secure and Privacy-Preserving Exploration of Distributed Clinical and Genomic Data. IEEE ACM Trans. Comput. Biol. Bioinform. 16 (4) (2019)
Vincent Zoete, Thierry Schüpbach, Christophe Bovigny, Prasad Chaskar, Antoine Daina, Ute F. Röhrig, Olivier Michielin
Attracting cavities for docking. Replacing the rough energy landscape of the protein by a smooth attracting landscape. J. Comput. Chem. 37 (4) (2016)
Vincent Zoete, Antoine Daina, Christophe Bovigny, Olivier Michielin
SwissSimilarity: A Web Tool for Low to Ultra High Throughput Ligand-Based Virtual Screening. J. Chem. Inf. Model. 56 (8) (2016)
Heinz Stockinger, Adrian M. Altenhoff, Konstantin Arnold, Amos Bairoch, Frederic B. Bastian, Sven Bergmann, Lydie Bougueleret, Philipp Bucher, Mauro Delorenzi, Lydie Lane, Philippe Le Mercier, Frédérique Lisacek, Olivier Michielin, Patricia M. Palagi, Jacques Rougemont, Torsten Schwede, Christian von Mering, Erik van Nimwegen, Daniel Walther, Ioannis Xenarios, Mihaela Zavolan, Evgeny M. Zdobnov, Vincent Zoete, Ron D. Appel
Fifteen years SIB Swiss Institute of Bioinformatics: life science databases, tools and support. Nucleic Acids Res. 42 (Webserver-Issue) (2014)
Antoine Daina, Olivier Michielin, Vincent Zoete
-Octanol/Water Partition Coefficient for Drug Design Using the GB/SA Approach. J. Chem. Inf. Model. 54 (12) (2014)
David Gfeller, Aurélien Grosdidier, Matthias Wirth, Antoine Daina, Olivier Michielin, Vincent Zoete
SwissTargetPrediction: a web server for target prediction of bioactive small molecules. Nucleic Acids Res. 42 (Webserver-Issue) (2014)
David Gfeller, Olivier Michielin, Vincent Zoete
Shaping the interaction landscape of bioactive molecules. Bioinform. 29 (23) (2013)
Matthias Wirth, Andrea Volkamer, Vincent Zoete, Friedrich Rippmann, Olivier Michielin, Matthias Rarey, Wolfgang H. B. Sauer
Protein pocket and ligand shape comparison and its application in virtual screening. J. Comput. Aided Mol. Des. 27 (6) (2013)
David Gfeller, Olivier Michielin, Vincent Zoete
SwissSidechain: a molecular and structural database of non-natural sidechains. Nucleic Acids Res. 41 (Database-Issue) (2013)
Matthias Wirth, Vincent Zoete, Olivier Michielin, Wolfgang H. B. Sauer
SwissBioisostere: a database of molecular replacements for ligand design. Nucleic Acids Res. 41 (Database-Issue) (2013)
Maria U. Johansson, Vincent Zoete, Olivier Michielin, Nicolas Guex
Defining and searching for structural motifs using DeepView/Swiss-PdbViewer. BMC Bioinform. 13 (2012)
David Gfeller, Olivier Michielin, Vincent Zoete
Expanding molecular modeling and design tools to non-natural sidechains. J. Comput. Chem. 33 (18) (2012)
Aurélien Grosdidier, Vincent Zoete, Olivier Michielin
Fast docking using the CHARMM force field with EADock DSS. J. Comput. Chem. 32 (10) (2011)
Aurélien Grosdidier, Vincent Zoete, Olivier Michielin
SwissDock, a protein-small molecule docking web service based on EADock DSS. Nucleic Acids Res. 39 (Web-Server-Issue) (2011)
Vincent Zoete, Michel A. Cuendet, Aurélien Grosdidier, Olivier Michielin
SwissParam: A fast force field generation tool for small organic molecules. J. Comput. Chem. 32 (11) (2011)
Thierry Schüpbach, Vincent Zoete, Brice Tsakam-Sotché, Olivier Michielin
Fourier transform convolution integrals applied to generalized Born molecular volume. J. Comput. Chem. 31 (3) (2010)
Ute F. Röhrig, Aurélien Grosdidier, Vincent Zoete, Olivier Michielin
Docking to heme proteins. J. Comput. Chem. 30 (14) (2009)
Aurélien Grosdidier, Vincent Zoete, Olivier Michielin
Blind docking of 260 protein-ligand complexes with EADock 2.0. J. Comput. Chem. 30 (13) (2009)
Vincent Zoete, Olivier Michielin, Martin Karplus
Protein-ligand binding free energy estimation using molecular mechanics and continuum electrostatics. Application to HIV-1 protease inhibitors. J. Comput. Aided Mol. Des. 17 (12) (2003)