David Gfeller

Publication Activity (10 Years)

Years Active: 2012-2023
Publications (10 Years): 6

Top Topics

Protein Homology

Major Histocompatibility Complex

Top Venues

Nucleic Acids Res.

PLoS Comput. Biol.

Publications

Daniel M. Tadros, Simon Eggenschwiler, Julien Racle, David Gfeller
The MHC Motif Atlas: a database of MHC binding specificities and ligands. Nucleic Acids Res. 51 (D1) (2023)
Mariia Bilous, Loc Tran, Chiara Cianciaruso, Aurélie Gabriel, Hugo Michel, Santiago J. Carmona, Mikael J. Pittet, David Gfeller
Metacells untangle large and complex single-cell transcriptome networks. BMC Bioinform. 23 (1) (2022)
Rachel M. Pyke, Raphael Genolet, Alexandre Harari, George Coukos, David Gfeller, Hannah Carter
Computational KIR copy number discovery reveals interaction between inhibitory receptor burden and survival. PSB (2019)
Linda Dib, Nicolas Salamin, David Gfeller
Polymorphic sites preferentially avoid co-evolving residues in MHC class I proteins. PLoS Comput. Biol. 14 (5) (2018)
Michal Bassani-Sternberg, Chloé Chong, Philippe Guillaume, Marthe Solleder, HuiSong Pak, Philippe O. Gannon, Lana E. Kandalaft, George Coukos, David Gfeller
Deciphering HLA-I motifs across HLA peptidomes improves neo-antigen predictions and identifies allostery regulating HLA specificity. PLoS Comput. Biol. 13 (8) (2017)
David Gfeller, Vincent Zoete
Protein homology reveals new targets for bioactive small molecules. Bioinform. 31 (16) (2015)
David Gfeller, Aurélien Grosdidier, Matthias Wirth, Antoine Daina, Olivier Michielin, Vincent Zoete
SwissTargetPrediction: a web server for target prediction of bioactive small molecules. Nucleic Acids Res. 42 (Webserver-Issue) (2014)
David Gfeller, Olivier Michielin, Vincent Zoete
Shaping the interaction landscape of bioactive molecules. Bioinform. 29 (23) (2013)
David Gfeller, Olivier Michielin, Vincent Zoete
SwissSidechain: a molecular and structural database of non-natural sidechains. Nucleic Acids Res. 41 (Database-Issue) (2013)
David Gfeller, Olivier Michielin, Vincent Zoete
Expanding molecular modeling and design tools to non-natural sidechains. J. Comput. Chem. 33 (18) (2012)
Stefano Mostarda, David Gfeller, Francesco Rao
Beyond the Binding Site: The Role of the β2 - β3 Loop and Extra-Domain Structures in PDZ Domains. PLoS Comput. Biol. 8 (3) (2012)