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Hannah Carter
Publication Activity (10 Years)
Years Active: 2009-2023
Publications (10 Years): 7
Top Topics
Genome Sequencing
Protein Interaction Data
Metadata
Breast Cancer
Top Venues
PSB
Bioinform.
BMC Bioinform.
Database J. Biol. Databases Curation
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Publications
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Zeynep Kosaloglu-Yalçin
,
Nina Blazeska
,
Randi Vita
,
Hannah Carter
,
Morten Nielsen
,
Stephen Schoenberger
,
Alessandro Sette
,
Bjoern Peters
The Cancer Epitope Database and Analysis Resource (CEDAR).
Nucleic Acids Res.
51 (D1) (2023)
Adam Klie
,
Brian Tsui
,
Shamim Mollah
,
Dylan Skola
,
Michelle Dow
,
Chun-Nan Hsu
,
Hannah Carter
Increasing metadata coverage of SRA BioSample entries using deep learning-based named entity recognition.
Database J. Biol. Databases Curation
2021 (2021)
Rachel M. Pyke
,
Raphael Genolet
,
Alexandre Harari
,
George Coukos
,
David Gfeller
,
Hannah Carter
Computational KIR copy number discovery reveals interaction between inhibitory receptor burden and survival.
PSB
(2019)
Alexandra R. Buckley
,
Trey Ideker
,
Hannah Carter
,
Nicholas J. Schork
Rare variant phasing using paired tumor: normal sequence data.
BMC Bioinform.
20 (1) (2019)
Brian Tsui
,
Michelle Dow
,
Dylan Skola
,
Hannah Carter
Extracting allelic read counts from 250, 000 human sequencing runs in Sequence Read Archive.
PSB
(2019)
Billur Engin
,
Matan Hofree
,
Hannah Carter
Erratum: Identifying mutation specific cancer pathways using a structurally resolved protein interaction network.
PSB
(2018)
Billur Engin
,
Matan Hofree
,
Hannah Carter
Identifying Mutation Specific Cancer Pathways Using a Structurally Resolved Protein Interaction Network.
Pacific Symposium on Biocomputing
(2015)
Yun-Ching Chen
,
Christopher Douville
,
Cheng Wang
,
Noushin Niknafs
,
Grace Yeo
,
Violeta Beleva Guthrie
,
Hannah Carter
,
Peter D. Stenson
,
David N. Cooper
,
Biao Li
,
Sean D. Mooney
,
Rachel Karchin
A Probabilistic Model to Predict Clinical Phenotypic Traits from Genome Sequencing.
PLoS Comput. Biol.
10 (9) (2014)
Christopher Douville
,
Hannah Carter
,
Rick Kim
,
Noushin Niknafs
,
Mark Diekhans
,
Peter D. Stenson
,
David N. Cooper
,
Michael C. Ryan
,
Rachel Karchin
CRAVAT: cancer-related analysis of variants toolkit.
Bioinform.
29 (5) (2013)
Wing Chung Wong
,
Dewey Kim
,
Hannah Carter
,
Mark Diekhans
,
Michael C. Ryan
,
Rachel Karchin
CHASM and SNVBox: toolkit for detecting biologically important single nucleotide mutations in cancer.
Bioinform.
27 (15) (2011)
Ursula Pieper
,
Narayanan Eswar
,
Ben M. Webb
,
David Eramian
,
Libusha Kelly
,
David T. Barkan
,
Hannah Carter
,
Parminder Mankoo
,
Rachel Karchin
,
Marc A. Martí-Renom
,
Fred P. Davis
,
Andrej Sali
MODBASE, a database of annotated comparative protein structure models and associated resources.
Nucleic Acids Res.
37 (Database-Issue) (2009)