Hannah Carter

Publication Activity (10 Years)

Years Active: 2009-2024
Publications (10 Years): 8

Top Topics

Named Entity Recognition

Imbalanced Datasets

Protein Interaction Data

Top Venues

Database J. Biol. Databases Curation

Pacific Symposium on Biocomputing

Publications

Eve Richardson, Raphael Trevizani, Jason A. Greenbaum, Hannah Carter, Morten Nielsen, Bjoern Peters
The receiver operating characteristic curve accurately assesses imbalanced datasets. Patterns 5 (6) (2024)
Zeynep Kosaloglu-Yalçin, Nina Blazeska, Randi Vita, Hannah Carter, Morten Nielsen, Stephen Schoenberger, Alessandro Sette, Bjoern Peters
The Cancer Epitope Database and Analysis Resource (CEDAR). Nucleic Acids Res. 51 (D1) (2023)
Adam R. Klie, David Laub, James V. Talwar, Hayden Stites, Tobias Jores, Joe J. Solvason, Emma K. Farley, Hannah Carter
Predictive analyses of regulatory sequences with EUGENe. Nat. Comput. Sci. 3 (11) (2023)
Adam Klie, Brian Tsui, Shamim Mollah, Dylan Skola, Michelle Dow, Chun-Nan Hsu, Hannah Carter
Increasing metadata coverage of SRA BioSample entries using deep learning-based named entity recognition. Database J. Biol. Databases Curation 2021 (2021)
Rachel M. Pyke, Raphael Genolet, Alexandre Harari, George Coukos, David Gfeller, Hannah Carter
Computational KIR copy number discovery reveals interaction between inhibitory receptor burden and survival. PSB (2019)
Alexandra R. Buckley, Trey Ideker, Hannah Carter, Nicholas J. Schork
Rare variant phasing using paired tumor: normal sequence data. BMC Bioinform. 20 (1) (2019)
Brian Tsui, Michelle Dow, Dylan Skola, Hannah Carter
Extracting allelic read counts from 250, 000 human sequencing runs in Sequence Read Archive. PSB (2019)
Billur Engin, Matan Hofree, Hannah Carter
Erratum: Identifying mutation specific cancer pathways using a structurally resolved protein interaction network. PSB (2018)
Billur Engin, Matan Hofree, Hannah Carter
Identifying Mutation Specific Cancer Pathways Using a Structurally Resolved Protein Interaction Network. Pacific Symposium on Biocomputing (2015)
Yun-Ching Chen, Christopher Douville, Cheng Wang, Noushin Niknafs, Grace Yeo, Violeta Beleva Guthrie, Hannah Carter, Peter D. Stenson, David N. Cooper, Biao Li, Sean D. Mooney, Rachel Karchin
A Probabilistic Model to Predict Clinical Phenotypic Traits from Genome Sequencing. PLoS Comput. Biol. 10 (9) (2014)
Christopher Douville, Hannah Carter, Rick Kim, Noushin Niknafs, Mark Diekhans, Peter D. Stenson, David N. Cooper, Michael C. Ryan, Rachel Karchin
CRAVAT: cancer-related analysis of variants toolkit. Bioinform. 29 (5) (2013)
Wing Chung Wong, Dewey Kim, Hannah Carter, Mark Diekhans, Michael C. Ryan, Rachel Karchin
CHASM and SNVBox: toolkit for detecting biologically important single nucleotide mutations in cancer. Bioinform. 27 (15) (2011)
Ursula Pieper, Narayanan Eswar, Ben M. Webb, David Eramian, Libusha Kelly, David T. Barkan, Hannah Carter, Parminder Mankoo, Rachel Karchin, Marc A. Martí-Renom, Fred P. Davis, Andrej Sali
MODBASE, a database of annotated comparative protein structure models and associated resources. Nucleic Acids Res. 37 (Database-Issue) (2009)