Michael C. Ryan

Publication Activity (10 Years)

Years Active: 2007-2019
Publications (10 Years): 2

Top Topics

Microarray Data

Gene Prediction

Top Venues

Nucleic Acids Res.

Publications

Michael C. Ryan, Mark Stucky, Chris Wakefield, James M. Melott, Rehan Akbani, John N. Weinstein, Bradley M. Broom
Interactive Clustered Heat Map Builder: An easy web-based tool for creating sophisticated clustered heat maps. F1000Research 8 (2019)
Michael C. Ryan, Wing Chung Wong, Robert Brown, Rehan Akbani, Xiaoping Su, Bradley M. Broom, James M. Melott, John N. Weinstein
TCGASpliceSeq a compendium of alternative mRNA splicing in cancer. Nucleic Acids Res. 44 (Database-Issue) (2016)
Michael C. Ryan, Susan Ostmo, Karyn Jonas, Audina Berrocal, Kimberly Drenser, Jason Horowitz, Thomas C. Lee, Charles Simmons, Maria-Ana Martinez-Castellanos, R. V. P. Chan, Michael F. Chiang
Development and Evaluation of Reference Standards for Image-based Telemedicine Diagnosis and Clinical Research Studies in Ophthalmology. AMIA (2014)
Christopher Douville, Hannah Carter, Rick Kim, Noushin Niknafs, Mark Diekhans, Peter D. Stenson, David N. Cooper, Michael C. Ryan, Rachel Karchin
CRAVAT: cancer-related analysis of variants toolkit. Bioinform. 29 (5) (2013)
Michael C. Ryan, James A. Cleland, RyangGuk Kim, Wing Chung Wong, John N. Weinstein
SpliceSeq: a resource for analysis and visualization of RNA-Seq data on alternative splicing and its functional impacts. Bioinform. 28 (18) (2012)
Wing Chung Wong, Dewey Kim, Hannah Carter, Mark Diekhans, Michael C. Ryan, Rachel Karchin
CHASM and SNVBox: toolkit for detecting biologically important single nucleotide mutations in cancer. Bioinform. 27 (15) (2011)
Ari B. Kahn, Barry Zeeberg, Michael C. Ryan, D. Curtis Jamison, David M. Rockoff, Yves Pommier, John N. Weinstein
Ontogenomic study of the relationship between number of gene splice variants and GO categorization. Bioinform. 26 (16) (2010)
Michael C. Ryan, Mark Diekhans, Stephanie Lien, Yun Liu, Rachel Karchin
LS-SNP/PDB: annotated non-synonymous SNPs mapped to Protein Data Bank structures. Bioinform. 25 (11) (2009)
Michael C. Ryan, Barry Zeeberg, Natasha J. Caplen, James A. Cleland, Ari B. Kahn, Hongfang Liu, John N. Weinstein
SpliceCenter: A suite of web-based bioinformatic applications for evaluating the impact of alternative splicing on RT-PCR, RNAi, microarray, and peptide-based studies. BMC Bioinform. 9 (2008)
Ari B. Kahn, Michael C. Ryan, Hongfang Liu, Barry Zeeberg, D. Curtis Jamison, John N. Weinstein
SpliceMiner: a high-throughput database implementation of the NCBI Evidence Viewer for microarray splice variant analysis. BMC Bioinform. 8 (2007)
Hongfang Liu, Barry Zeeberg, Gang Qu, Akif Günes Koru, Alessandro Ferrucci, Ari B. Kahn, Michael C. Ryan, Antej Nuhanovic, Peter J. Munson, William C. Reinhold, David W. Kane, John N. Weinstein
AffyProbeMiner: a web resource for computing or retrieving accurately redefined Affymetrix probe sets. Bioinform. 23 (18) (2007)