Jason A. Greenbaum

Publication Activity (10 Years)

Years Active: 2013-2024
Publications (10 Years): 9

Top Topics

Binding Peptides

Top Venues

Nucleic Acids Res.

Briefings Bioinform.

Publications

Eve Richardson, Raphael Trevizani, Jason A. Greenbaum, Hannah Carter, Morten Nielsen, Bjoern Peters
The receiver operating characteristic curve accurately assesses imbalanced datasets. Patterns 5 (6) (2024)
Jarjapu Mahita, Brendan Ha, Anais Gambiez, Sharon L. Schendel, Haoyang Li, Kathryn M. Hastie, S. Moses Dennison, Kan Li, Natalia Kuzmina, Sivakumar Periasamy, Alexander Bukreyev, Jennifer E. Munt, Mary Osei-Twum, Caroline Atyeo, James A. Overton, Randi Vita, Hector Guzman-Orozco, Marcus Mendes, Mari Kojima, Peter J. Halfmann, Yoshihiro Kawaoka, Galit Alter, Luc Gagnon, Ralph S. Baric, Georgia D. Tomaras, Tim Germann, Daniel Bedinger, Jason A. Greenbaum, Erica Ollmann Saphire, Bjoern Peters
Coronavirus Immunotherapeutic Consortium Database. Database J. Biol. Databases Curation 2023 (2023)
Daniel Marrama, William D. Chronister, Luise Westernberg, Randi Vita, Zeynep Kosaloglu-Yalçin, Alessandro Sette, Morten Nielsen, Jason A. Greenbaum, Bjoern Peters
PEPMatch: a tool to identify short peptide sequence matches in large sets of proteins. BMC Bioinform. 24 (1) (2023)
Raphael Trevizani, Zhen Yan, Jason A. Greenbaum, Alessandro Sette, Morten Nielsen, Bjoern Peters
A comprehensive analysis of the IEDB MHC class-I automated benchmark. Briefings Bioinform. 23 (4) (2022)
Paul F. Zierep, Randi Vita, Nina Blazeska, Aurélien F. A. Moumbock, Jason A. Greenbaum, Bjoern Peters, Stefan Günther
Towards the prediction of non-peptidic epitopes. PLoS Comput. Biol. 18 (2) (2022)
Sandeep Kumar Dhanda, Swapnil Mahajan, Sinu Paul, Zhen Yan, Haeuk Kim, Martin Closter Jespersen, Vanessa Isabell Jurtz, Massimo Andreatta, Jason A. Greenbaum, Paolo Marcatili, Alessandro Sette, Morten Nielsen, Bjoern Peters
IEDB-AR: immune epitope database - analysis resource in 2019. Nucleic Acids Res. 47 (Webserver-Issue) (2019)
Massimo Andreatta, Thomas Trolle, Zhen Yan, Jason A. Greenbaum, Bjoern Peters, Morten Nielsen
An automated benchmarking platform for MHC class II binding prediction methods. Bioinform. 34 (9) (2018)
Randi Vita, James A. Overton, Jason A. Greenbaum, Julia V. Ponomarenko, Jason D. Clark, Jason R. Cantrell, Daniel K. Wheeler, Joseph L. Gabbard, Deborah Hix, Alessandro Sette, Bjoern Peters
The immune epitope database (IEDB) 3.0. Nucleic Acids Res. 43 (Database-Issue) (2015)
Thomas Trolle, Imir G. Metushi, Jason A. Greenbaum, Yohan Kim, John Sidney, Ole Lund, Alessandro Sette, Bjoern Peters, Morten Nielsen
Automated benchmarking of peptide-MHC class I binding predictions. Bioinform. 31 (13) (2015)
Jorg J. A. Calis, Matt Maybeno, Jason A. Greenbaum, Daniela Weiskopf, Aruna D. De Silva, Alessandro Sette, Can Kesmir, Björn Peters
Properties of MHC Class I Presented Peptides That Enhance Immunogenicity. PLoS Comput. Biol. 9 (10) (2013)