Massimo Andreatta

Publication Activity (10 Years)

Years Active: 2011-2022
Publications (10 Years): 7

Top Topics

Sequence Alignment

Binding Peptides

Top Venues

Nucleic Acids Res.

IEEE ACM Trans. Comput. Biol. Bioinform.

Publications

Massimo Andreatta, Fabrice P. A. David, Christian Iseli, Nicolas Guex, Santiago J. Carmona
SPICA: Swiss portal for immune cell analysis. Nucleic Acids Res. 50 (D1) (2022)
Massimo Andreatta, Santiago J. Carmona
STACAS: Sub-Type Anchor Correction for Alignment in Seurat to integrate single-cell RNA-seq data. Bioinform. 37 (6) (2021)
Sandeep Kumar Dhanda, Swapnil Mahajan, Sinu Paul, Zhen Yan, Haeuk Kim, Martin Closter Jespersen, Vanessa Isabell Jurtz, Massimo Andreatta, Jason A. Greenbaum, Paolo Marcatili, Alessandro Sette, Morten Nielsen, Bjoern Peters
IEDB-AR: immune epitope database - analysis resource in 2019. Nucleic Acids Res. 47 (Webserver-Issue) (2019)
Massimo Andreatta, Thomas Trolle, Zhen Yan, Jason A. Greenbaum, Bjoern Peters, Morten Nielsen
An automated benchmarking platform for MHC class II binding prediction methods. Bioinform. 34 (9) (2018)
Massimo Andreatta, Bruno Alvarez, Morten Nielsen
GibbsCluster: unsupervised clustering and alignment of peptide sequences. Nucleic Acids Res. 45 (Webserver-Issue) (2017)
Morten Nielsen, Massimo Andreatta
NNAlign: a platform to construct and evaluate artificial neural network models of receptor-ligand interactions. Nucleic Acids Res. 45 (Webserver-Issue) (2017)
Massimo Andreatta, Morten Nielsen
Gapped sequence alignment using artificial neural networks: application to the MHC class I system. Bioinform. 32 (4) (2016)
Ying Fan, Ruoshui Lu, Lusheng Wang, Massimo Andreatta, Shuai Cheng Li
Quantifying Significance of MHC II Residues. IEEE ACM Trans. Comput. Biol. Bioinform. 11 (1) (2014)
Massimo Andreatta, Ole Lund, Morten Nielsen
Simultaneous alignment and clustering of peptide data using a Gibbs sampling approach. Bioinform. 29 (1) (2013)
Francisco S. Roque, Peter Bjødstrup Jensen, Henriette Schmock, Marlene Dalgaard, Massimo Andreatta, Thomas F. Hansen, Karen Søeby, Søren Bredkjær, Anders Juul, Thomas Werge, Lars Juhl Jensen, Søren Brunak
Using Electronic Patient Records to Discover Disease Correlations and Stratify Patient Cohorts. PLoS Comput. Biol. 7 (8) (2011)