Paolo Marcatili

Publication Activity (10 Years)

Years Active: 2008-2022
Publications (10 Years): 11

Top Topics

Protein Structure

Structural Features

Clonal Selection Theory

Top Venues

Nucleic Acids Res.

Publications

Magnus Haraldson Høie, Erik Nicolas Kiehl, Bent Petersen, Morten Nielsen, Ole Winther, Henrik Nielsen, Jeppe Hallgren, Paolo Marcatili
NetSurfP-3.0: accurate and fast prediction of protein structural features by protein language models and deep learning. Nucleic Acids Res. 50 (W1) (2022)
Francesco Ambrosetti, Tobias Hegelund Olsen, Pier Paolo Olimpieri, Brian Jiménez-García, Edoardo Milanetti, Paolo Marcatili, Alexandre M. J. J. Bonvin
proABC-2: PRediction of AntiBody contacts v2 and its application to information-driven docking. Bioinform. 36 (20) (2020)
Wanessa C. Lima, Elisabeth Gasteiger, Paolo Marcatili, Paula D. Duek, Amos Bairoch, Pierre Cosson
The ABCD database: a repository for chemically defined antibodies. Nucleic Acids Res. 48 (Database-Issue) (2020)
Swapnil Mahajan, Zhen Yan, Martin Closter Jespersen, Kamilla Kjærgaard Jensen, Paolo Marcatili, Morten Nielsen, Alessandro Sette, Bjoern Peters
Benchmark datasets of immune receptor-epitope structural complexes. BMC Bioinform. 20 (1) (2019)
Sandeep Kumar Dhanda, Swapnil Mahajan, Sinu Paul, Zhen Yan, Haeuk Kim, Martin Closter Jespersen, Vanessa Isabell Jurtz, Massimo Andreatta, Jason A. Greenbaum, Paolo Marcatili, Alessandro Sette, Morten Nielsen, Bjoern Peters
IEDB-AR: immune epitope database - analysis resource in 2019. Nucleic Acids Res. 47 (Webserver-Issue) (2019)
Eleftheria Polychronidou, Ilias Kalamaras, Andreas Agathangelidis, Lesley Ann Sutton, Xiao-Jie Yan, Vasilis Bikos, Anna Vardi, Konstantinos Mochament, Nicholas Chiorazzi, Chrysoula Belessi, Richard Rosenquist, Paolo Ghia, Kostas Stamatopoulos, Panayiotis M. Vlamos, Anna Chailyan, Nanna Overby, Paolo Marcatili, Anastasia Hatzidimitriou, Dimitrios Tzovaras
Automated shape-based clustering of 3D immunoglobulin protein structures in chronic lymphocytic leukemia. BMC Bioinform. (14) (2018)
Konstantinos Mochament, Andreas Agathangelidis, Eleftheria Polychronidou, Christos Palaskas, Elias Kalamaras, Panagiotis Moschonas, Kostas Stamatopoulos, Anna Chailyan, Nanna Overby, Paolo Marcatili, Anastasia Hadzidimitriou, Dimitrios Tzovaras
3D Protein-Structure-Oriented Discovery of Clinical Relation Across Chronic Lymphocytic Leukemia Patients. IWBBIO (2) (2017)
Martin Closter Jespersen, Bjoern Peters, Morten Nielsen, Paolo Marcatili
BepiPred-2.0: improving sequence-based B-cell epitope prediction using conformational epitopes. Nucleic Acids Res. 45 (Webserver-Issue) (2017)
Lorenzo Asti, Guido Uguzzoni, Paolo Marcatili, Andrea Pagnani
Maximum-Entropy Models of Sequenced Immune Repertoires Predict Antigen-Antibody Affinity. PLoS Comput. Biol. 12 (4) (2016)
Michael Schantz Klausen, Mads Valdemar Anderson, Martin Closter Jespersen, Morten Nielsen, Paolo Marcatili
LYRA, a webserver for lymphocyte receptor structural modeling. Nucleic Acids Res. 43 (Webserver-Issue) (2015)
Pier Paolo Olimpieri, Paolo Marcatili, Anna Tramontano
Tabhu: tools for antibody humanization. Bioinform. 31 (3) (2015)
Mario Abdel Messih, Rosalba Lepore, Paolo Marcatili, Anna Tramontano
Improving the accuracy of the structure prediction of the third hypervariable loop of the heavy chains of antibodies. Bioinform. 30 (19) (2014)
Pier Paolo Olimpieri, Anna Chailyan, Anna Tramontano, Paolo Marcatili
Prediction of site-specific interactions in antibody-antigen complexes: the proABC method and server. Bioinform. 29 (18) (2013)
Anna Chailyan, Anna Tramontano, Paolo Marcatili
A database of immunoglobulins with integrated tools: DIGIT. Nucleic Acids Res. 40 (Database-Issue) (2012)
Matteo Floris, Domenico Raimondo, Guido Leoni, Massimiliano Orsini, Paolo Marcatili, Anna Tramontano
MAISTAS: a tool for automatic structural evaluation of alternative splicing products. Bioinform. 27 (12) (2011)
Anna Chailyan, Davide Cirillo, Paolo Marcatili, Anna Tramontano
Structural landscape of immunoglobulin lambda light chains. BCB (2010)
Loredana Le Pera, Paolo Marcatili, Anna Tramontano
PICMI: mapping point mutations on genomes. Bioinform. 26 (22) (2010)
Paolo Marcatili, Giovanni Bussotti, Anna Tramontano
The MoVIN server for the analysis of protein interaction networks. BMC Bioinform. 9 (S-2) (2008)
Gabriele Ausiello, Pier Federico Gherardini, Paolo Marcatili, Anna Tramontano, Allegra Via, Manuela Helmer-Citterich
FunClust: a web server for the identification of structural motifs in a set of non-homologous protein structures. BMC Bioinform. 9 (S-2) (2008)
Paolo Marcatili, Alessandra Rosi, Anna Tramontano
PIGS: automatic prediction of antibody structures. Bioinform. 24 (17) (2008)