Marc A. Martí-Renom

Publication Activity (10 Years)

Years Active: 2000-2017
Publications (10 Years): 1

Top Topics

Capable Of Producing

Protein Tertiary Structure

Structural Features

Highly Accurate

Top Venues

PLoS Comput. Biol.

Publications

François Serra, Davide Baù, Mike Goodstadt, David Castillo, Guillaume J. Filion, Marc A. Martí-Renom
Automatic analysis and 3D-modelling of Hi-C data using TADbit reveals structural features of the fly chromatin colors. PLoS Comput. Biol. 13 (7) (2017)
Francisco Martínez-Jiménez, Marc A. Martí-Renom
Ligand-Target Prediction by Structural Network Biology Using nAnnoLyze. PLoS Comput. Biol. 11 (3) (2015)
Carsten Kemena, Giovanni Bussotti, Emidio Capriotti, Marc A. Martí-Renom, Cédric Notredame
Using tertiary structure for the computation of highly accurate multiple RNA alignments with the SARA-Coffee package. Bioinform. 29 (9) (2013)
Francisco Martínez-Jiménez, George Papadatos, Lun Yang, Iain M. Wallace, Vinod Kumar, Ursula Pieper, Andrej Sali, James R. Brown, John P. Overington, Marc A. Martí-Renom
. PLoS Comput. Biol. 9 (10) (2013)
Marc A. Martí-Renom
The Three-Dimensional Architecture of a Bacterial Genome and Its Alteration by Genetic Perturbation. RECOMB (2012)
Emidio Capriotti, Tomás Norambuena, Marc A. Martí-Renom, Francisco Melo
All-atom knowledge-based potential for RNA structure prediction and assessment. Bioinform. 27 (8) (2011)
Marc A. Martí-Renom, Leonid A. Mirny
Bridging the Resolution Gap in Structural Modeling of 3D Genome Organization. PLoS Comput. Biol. 7 (7) (2011)
Emidio Capriotti, Marc A. Martí-Renom
Quantifying the relationship between sequence and three-dimensional structure conservation in RNA. BMC Bioinform. 11 (2010)
Ursula Pieper, Narayanan Eswar, Ben M. Webb, David Eramian, Libusha Kelly, David T. Barkan, Hannah Carter, Parminder Mankoo, Rachel Karchin, Marc A. Martí-Renom, Fred P. Davis, Andrej Sali
MODBASE, a database of annotated comparative protein structure models and associated resources. Nucleic Acids Res. 37 (Database-Issue) (2009)
Emidio Capriotti, Marc A. Martí-Renom
SARA: a server for function annotation of RNA structures. Nucleic Acids Res. 37 (Web-Server-Issue) (2009)
Oriol Fornes, Ramon Aragues, Jordi Espadaler, Marc A. Martí-Renom, Andrej Sali, Baldo Oliva
ModLink+: improving fold recognition by using protein-protein interactions. Bioinform. 25 (12) (2009)
Emidio Capriotti, Marc A. Martí-Renom
RNA structure alignment by a unit-vector approach. ECCB (2008)
Jordi Espadaler, Narayanan Eswar, Enrique Querol, Francesc X. Avilés, Andrej Sali, Marc A. Martí-Renom, Baldomero Oliva
Prediction of enzyme function by combining sequence similarity and protein interactions. BMC Bioinform. 9 (2008)
Marc A. Martí-Renom, Andrea Rossi, Fátima Al-Shahrour, Fred P. Davis, Ursula Pieper, Joaquín Dopazo, Andrej Sali
The AnnoLite and AnnoLyze programs for comparative annotation of protein structures. BMC Bioinform. 8 (S-4) (2007)
Ramon Aragues, Andrej Sali, Jaume Bonet, Marc A. Martí-Renom, Baldo Oliva
Characterization of Protein Hubs by Inferring Interacting Motifs from Protein Interactions. PLoS Comput. Biol. 3 (9) (2007)
Marc A. Martí-Renom, Ursula Pieper, Mallur S. Madhusudhan, Andrea Rossi, Narayanan Eswar, Fred P. Davis, Fátima Al-Shahrour, Joaquín Dopazo, Andrej Sali
DBAli tools: mining the protein structure space. Nucleic Acids Res. 35 (Web-Server-Issue) (2007)
Ursula Pieper, Narayanan Eswar, Fred P. Davis, Hannes Braberg, Mallur S. Madhusudhan, Andrea Rossi, Marc A. Martí-Renom, Rachel Karchin, Ben M. Webb, David Eramian, Min-Yi Shen, Libusha Kelly, Francisco Melo, Andrej Sali
MODBASE: a database of annotated comparative protein structure models and associated resources. Nucleic Acids Res. 34 (Database-Issue) (2006)
Ursula Pieper, Narayanan Eswar, Hannes Braberg, Mallur S. Madhusudhan, Fred P. Davis, Ashley C. Stuart, Nebojsa Mirkovic, Andrea Rossi, Marc A. Martí-Renom, András Fiser, Ben M. Webb, Daniel M. Greenblatt, Conrad C. Huang, Thomas E. Ferrin, Andrej Sali
MODBASE, a database of annotated comparative protein structure models, and associated resources. Nucleic Acids Res. 32 (Database-Issue) (2004)
Ingrid Y. Y. Koh, Volker A. Eyrich, Marc A. Martí-Renom, Dariusz Przybylski, Mallur S. Madhusudhan, Narayanan Eswar, Osvaldo Graña, Florencio Pazos, Alfonso Valencia, Andrej Sali, Burkhard Rost
EVA: evaluation of protein structure prediction servers. Nucleic Acids Res. 31 (13) (2003)
Narayanan Eswar, Bino John, Nebojsa Mirkovic, András Fiser, Valentin A. Ilyin, Ursula Pieper, Ashley C. Stuart, Marc A. Martí-Renom, Mallur S. Madhusudhan, Bozidar Yerkovich, Andrej Sali
Tools for comparative protein structure modeling and analysis. Nucleic Acids Res. 31 (13) (2003)
Valentin A. Ilyin, Ursula Pieper, Ashley C. Stuart, Marc A. Martí-Renom, Linda McMahan, Andrej Sali
ModView, visualization of multiple protein sequences and structures. Bioinform. 19 (1) (2003)
José M. Mas, Patrick Aloy, Marc A. Martí-Renom, Baldomero Oliva, R. de Llorens, Francesc X. Avilés, Enrique Querol
Classification of protein disulphide-bridge topologies. J. Comput. Aided Mol. Des. 15 (5) (2001)
Marc A. Martí-Renom, Valentin A. Ilyin, Andrej Sali
DBAli: a database of protein structure alignments. Bioinform. 17 (8) (2001)
Volker A. Eyrich, Marc A. Martí-Renom, Dariusz Przybylski, Mallur S. Madhusudhan, András Fiser, Florencio Pazos, Alfonso Valencia, Andrej Sali, Burkhard Rost
EVA: continuous automatic evaluation of protein structure prediction servers. Bioinform. 17 (12) (2001)
Xavier Serra-Hartmann, Xavier Rebordosa, Jaume Piñol, Enrique Querol, Marc A. Martí-Renom
ASAP: analysis of peptide composition. Bioinform. 16 (12) (2000)
Patrick Aloy, José M. Mas, Marc A. Martí-Renom, Enrique Querol, Francesc X. Avilés, Baldomero Oliva
Refinement of modelled structures by knowledge-based energy profiles and secondary structure prediction: Application to the human procarboxypeptidase A2. J. Comput. Aided Mol. Des. 14 (1) (2000)