Mallur S. Madhusudhan

Publication Activity (10 Years)

Years Active: 2001-2020
Publications (10 Years): 1

Top Topics

Intrinsically Disordered

Protein Sequences

Computational Methods

Multiple Sequence Alignments

Top Venues

Nucleic Acids Res.

Publications

Abhilesh S. Dhawanjewar, Ankit A. Roy, Mallur S. Madhusudhan
A knowledge-based scoring function to assess quaternary associations of proteins. Bioinform. 36 (12) (2020)
Kuan Pern Tan, Thanh Binh Nguyen, Siddharth Patel, Raghavan Varadarajan, Mallur S. Madhusudhan
of ionizable residues in proteins. Nucleic Acids Res. 41 (Webserver-Issue) (2013)
Hannes Braberg, Benjamin M. Webb, Elina Tjioe, Ursula Pieper, Andrej Sali, Mallur S. Madhusudhan
SALIGN: a web server for alignment of multiple protein sequences and structures. Bioinform. 28 (15) (2012)
Kuan Pern Tan, Raghavan Varadarajan, Mallur S. Madhusudhan
DEPTH: a web server to compute depth and predict small-molecule binding cavities in proteins. Nucleic Acids Res. 39 (Web-Server-Issue) (2011)
M. N. Nguyen, Kuan Pern Tan, Mallur S. Madhusudhan
CLICK - topology-independent comparison of biomolecular 3D structures. Nucleic Acids Res. 39 (Web-Server-Issue) (2011)
Ursula Pieper, Benjamin M. Webb, David T. Barkan, Dina Schneidman-Duhovny, Avner Schlessinger, Hannes Braberg, Zheng Yang, Elaine C. Meng, Eric F. Pettersen, Conrad C. Huang, Ruchira S. Datta, Parthasarathy Sampathkumar, Mallur S. Madhusudhan, Kimmen Sjölander, Thomas E. Ferrin, Stephen K. Burley, Andrej Sali
ModBase, a database of annotated comparative protein structure models, and associated resources. Nucleic Acids Res. 39 (Database-Issue) (2011)
Kanika Bajaj, Mallur S. Madhusudhan, Bharat V. Adkar, Purbani Chakrabarti, C. Ramakrishnan, Andrej Sali, Raghavan Varadarajan
Stereochemical Criteria for Prediction of the Effects of Proline Mutations on Protein Stability. PLoS Comput. Biol. 3 (12) (2007)
Marc A. Martí-Renom, Ursula Pieper, Mallur S. Madhusudhan, Andrea Rossi, Narayanan Eswar, Fred P. Davis, Fátima Al-Shahrour, Joaquín Dopazo, Andrej Sali
DBAli tools: mining the protein structure space. Nucleic Acids Res. 35 (Web-Server-Issue) (2007)
Ursula Pieper, Narayanan Eswar, Fred P. Davis, Hannes Braberg, Mallur S. Madhusudhan, Andrea Rossi, Marc A. Martí-Renom, Rachel Karchin, Ben M. Webb, David Eramian, Min-Yi Shen, Libusha Kelly, Francisco Melo, Andrej Sali
MODBASE: a database of annotated comparative protein structure models and associated resources. Nucleic Acids Res. 34 (Database-Issue) (2006)
Ursula Pieper, Narayanan Eswar, Hannes Braberg, Mallur S. Madhusudhan, Fred P. Davis, Ashley C. Stuart, Nebojsa Mirkovic, Andrea Rossi, Marc A. Martí-Renom, András Fiser, Ben M. Webb, Daniel M. Greenblatt, Conrad C. Huang, Thomas E. Ferrin, Andrej Sali
MODBASE, a database of annotated comparative protein structure models, and associated resources. Nucleic Acids Res. 32 (Database-Issue) (2004)
Ingrid Y. Y. Koh, Volker A. Eyrich, Marc A. Martí-Renom, Dariusz Przybylski, Mallur S. Madhusudhan, Narayanan Eswar, Osvaldo Graña, Florencio Pazos, Alfonso Valencia, Andrej Sali, Burkhard Rost
EVA: evaluation of protein structure prediction servers. Nucleic Acids Res. 31 (13) (2003)
Narayanan Eswar, Bino John, Nebojsa Mirkovic, András Fiser, Valentin A. Ilyin, Ursula Pieper, Ashley C. Stuart, Marc A. Martí-Renom, Mallur S. Madhusudhan, Bozidar Yerkovich, Andrej Sali
Tools for comparative protein structure modeling and analysis. Nucleic Acids Res. 31 (13) (2003)
Volker A. Eyrich, Marc A. Martí-Renom, Dariusz Przybylski, Mallur S. Madhusudhan, András Fiser, Florencio Pazos, Alfonso Valencia, Andrej Sali, Burkhard Rost
EVA: continuous automatic evaluation of protein structure prediction servers. Bioinform. 17 (12) (2001)