Dina Schneidman-Duhovny

Publication Activity (10 Years)

Years Active: 2004-2024
Publications (10 Years): 4

Top Topics

Weakly Supervised

Protein Structure

Top Venues

Nucleic Acids Res.

J. Chem. Inf. Model.

Publications

Meitar Sela, Jonathan R. Church, Igor Schapiro, Dina Schneidman-Duhovny
RhoMax: Computational Prediction of Rhodopsin Absorption Maxima Using Geometric Deep Learning. J. Chem. Inf. Model. 64 (12) (2024)
Matan Halfon, Tomer Cohen, Raanan Fattal, Dina Schneidman-Duhovny
ContactNet: Geometric-Based Deep Learning Model for Predicting Protein-Protein Interactions. CoRR (2024)
Dina Schneidman-Duhovny, Michal Hammel, John A. Tainer, Andrej Sali
FoXS, FoXSDock and MultiFoXS: Single-state and multi-state structural modeling of proteins and their complexes based on SAXS profiles. Nucleic Acids Res. 44 (Webserver-Issue) (2016)
Naama Hurwitz, Dina Schneidman-Duhovny, Haim J. Wolfson
Memdock: an α-helical membrane protein docking algorithm. Bioinform. 32 (16) (2016)
Ursula Pieper, Benjamin M. Webb, Guang Qiang Dong, Dina Schneidman-Duhovny, Hao Fan, Seung Joong Kim, Natalia Khuri, Yannick G. Spill, Patrick Weinkam, Michal Hammel, John A. Tainer, Michael Nilges, Andrej Sali
ModBase, a database of annotated comparative protein structure models and associated resources. Nucleic Acids Res. 42 (Database-Issue) (2014)
Guang Qiang Dong, Hao Fan, Dina Schneidman-Duhovny, Ben M. Webb, Andrej Sali
Optimized atomic statistical potentials: assessment of protein interfaces and loops. Bioinform. 29 (24) (2013)
Dina Schneidman-Duhovny, Andrea Rossi, Agustin Avila-Sakar, Seung Joong Kim, Javier A. Velázquez-Muriel, Pavel Strop, Hong Liang, Kristin A. Krukenberg, Maofu Liao, Ho Min Kim, Solmaz Sobhanifar, Volker Dötsch, Arvind Rajpal, Jaume Pons, David A. Agard, Yifan Cheng, Andrej Sali
A method for integrative structure determination of protein-protein complexes. Bioinform. 28 (24) (2012)
Hao Fan, Dina Schneidman-Duhovny, John J. Irwin, Guang Qiang Dong, Brian K. Shoichet, Andrej Sali
Statistical Potential for Modeling and Ranking of Protein-Ligand Interactions. J. Chem. Inf. Model. 51 (12) (2011)
Ursula Pieper, Benjamin M. Webb, David T. Barkan, Dina Schneidman-Duhovny, Avner Schlessinger, Hannes Braberg, Zheng Yang, Elaine C. Meng, Eric F. Pettersen, Conrad C. Huang, Ruchira S. Datta, Parthasarathy Sampathkumar, Mallur S. Madhusudhan, Kimmen Sjölander, Thomas E. Ferrin, Stephen K. Burley, Andrej Sali
ModBase, a database of annotated comparative protein structure models, and associated resources. Nucleic Acids Res. 39 (Database-Issue) (2011)
Dina Schneidman-Duhovny, Michal Hammel, Andrej Sali
FoXS: a web server for rapid computation and fitting of SAXS profiles. Nucleic Acids Res. 38 (Web-Server-Issue) (2010)
Oranit Dror, Dina Schneidman-Duhovny, Yuval Inbar, Ruth Nussinov, Haim J. Wolfson
Novel Approach for Efficient Pharmacophore-Based Virtual Screening: Method and Applications. J. Chem. Inf. Model. 49 (10) (2009)
Dina Schneidman-Duhovny, Oranit Dror, Yuval Inbar, Ruth Nussinov, Haim J. Wolfson
Deterministic Pharmacophore Detection via Multiple Flexible Alignment of Drug-Like Molecules. J. Comput. Biol. 15 (7) (2008)
Dina Schneidman-Duhovny, Oranit Dror, Yuval Inbar, Ruth Nussinov, Haim J. Wolfson
PharmaGist: a webserver for ligand-based pharmacophore detection. Nucleic Acids Res. 36 (Web-Server-Issue) (2008)
Efrat Mashiach, Dina Schneidman-Duhovny, Nelly Andrusier, Ruth Nussinov, Haim J. Wolfson
FireDock: a web server for fast interaction refinement in molecular docking. Nucleic Acids Res. 36 (Web-Server-Issue) (2008)
Oranit Dror, Dina Schneidman-Duhovny, Alexandra Shulman-Peleg, Ruth Nussinov, Haim J. Wolfson, Roded Sharan
Structural similarity of genetically interacting proteins. BMC Syst. Biol. 2 (2008)
Yuval Inbar, Dina Schneidman-Duhovny, Oranit Dror, Ruth Nussinov, Haim J. Wolfson
Deterministic Pharmacophore Detection Via Multiple Flexible Alignment of Drug-Like Molecules. RECOMB (2007)
Dina Schneidman-Duhovny, Yuval Inbar, Ruth Nussinov, Haim J. Wolfson
PatchDock and SymmDock: servers for rigid and symmetric docking. Nucleic Acids Res. 33 (Web-Server-Issue) (2005)
Maxim Shatsky, Oranit Dror, Dina Schneidman-Duhovny, Ruth Nussinov, Haim J. Wolfson
BioInfo3D: a suite of tools for structural bioinformatics. Nucleic Acids Res. 32 (Web-Server-Issue) (2004)