Michael Nilges

Publication Activity (10 Years)

Years Active: 2003-2024
Publications (10 Years): 14

Top Topics

Computational Methods

Protein Interaction

Top Venues

J. Chem. Inf. Model.

Nucleic Acids Res.

Publications

Isaac Filella-Merce, Vincent Mallet, Eric Durand, Michael Nilges, Guillaume Bouvier, Riccardo Pellarin
AlignScape, displaying sequence similarity using self-organizing maps. Frontiers Bioinform. 4 (2024)
Vincent Mallet, Luis Checa Ruano, Alexandra Moine-Franel, Michael Nilges, Karen Druart, Guillaume Bouvier, Olivier Sperandio
InDeep: 3D fully convolutional neural networks to assist in silico drug design on protein-protein interactions. Bioinform. 38 (5) (2022)
Rachel Torchet, Karen Druart, Luis Checa Ruano, Alexandra Moine-Franel, Hélène Borges, Olivia Doppelt-Azeroual, Bryan Brancotte, Fabien Mareuil, Michael Nilges, Hervé Ménager, Olivier Sperandio
The iPPI-DB initiative: a community-centered database of protein-protein interaction modulators. Bioinform. 37 (1) (2021)
Hamed Khakzad, Lotta Happonen, Yasaman Karami, Sounak Chowdhury, Gizem Ertürk Bergdahl, Michael Nilges, Guy Tran Van Nhieu, Johan Malmström, Lars Malmström
Structural determination of Streptococcus pyogenes M1 protein interactions with human immunoglobulin G using integrative structural biology. PLoS Comput. Biol. 17 (1) (2021)
Fabrice Allain, Fabien Mareuil, Hervé Ménager, Michael Nilges, Benjamin Bardiaux
ARIAweb: a server for automated NMR structure calculation. Nucleic Acids Res. 48 (Webserver-Issue) (2020)
Carlile Lavor, Leo Liberti, Bruce Randall Donald, Bradley Worley, Benjamin Bardiaux, Thérèse E. Malliavin, Michael Nilges
Minimal NMR distance information for rigidity of protein graphs. Discret. Appl. Math. 256 (2019)
Damien Monet, Nathan Desdouits, Michael Nilges, Arnaud Blondel
mkgridXf: Consistent Identification of Plausible Binding Sites Despite the Elusive Nature of Cavities and Grooves in Protein Dynamics. J. Chem. Inf. Model. 59 (8) (2019)
Bradley Worley, Florent Delhommel, Florence Cordier, Thérèse E. Malliavin, Benjamin Bardiaux, Nicolas Wolff, Michael Nilges, Carlile Lavor, Leo Liberti
Tuning interval Branch-and-Prune for protein structure determination. J. Glob. Optim. 72 (1) (2018)
Simeon Carstens, Michael Nilges, Michael Habeck
Inferential Structure Determination of Chromosomes from Single-Cell Hi-C Data. PLoS Comput. Biol. 12 (12) (2016)
Isidro Cortes-Ciriano, Gerard J. P. van Westen, Guillaume Bouvier, Michael Nilges, John P. Overington, Andreas Bender, Thérèse E. Malliavin
Improved large-scale prediction of growth inhibition patterns using the NCI60 cancer cell line panel. Bioinform. 32 (1) (2016)
Nathalie Duclert-Savatier, Guillaume Bouvier, Michael Nilges, Thérèse E. Malliavin
Building Graphs To Describe Dynamics, Kinetics, and Energetics in the d-ALa: d-Lac Ligase VanA. J. Chem. Inf. Model. 56 (9) (2016)
Emna Harigua-Souiai, Isidro Cortes-Ciriano, Nathan Desdouits, Thérèse E. Malliavin, Ikram Guizani, Michael Nilges, Arnaud Blondel, Guillaume Bouvier
Identification of binding sites and favorable ligand binding moieties by virtual screening and self-organizing map analysis. BMC Bioinform. 16 (2015)
Andrea Cassioli, Benjamin Bardiaux, Guillaume Bouvier, Antonio Mucherino, Rafael Alves, Leo Liberti, Michael Nilges, Carlile Lavor, Thérèse E. Malliavin
An algorithm to enumerate all possible protein conformations verifying a set of distance constraints. BMC Bioinform. 16 (2015)
Guillaume Bouvier, Nathan Desdouits, Mathias Ferber, Arnaud Blondel, Michael Nilges
An automatic tool to analyze and cluster macromolecular conformations based on self-organizing maps. Bioinform. 31 (9) (2015)
Ursula Pieper, Benjamin M. Webb, Guang Qiang Dong, Dina Schneidman-Duhovny, Hao Fan, Seung Joong Kim, Natalia Khuri, Yannick G. Spill, Patrick Weinkam, Michal Hammel, John A. Tainer, Michael Nilges, Andrej Sali
ModBase, a database of annotated comparative protein structure models and associated resources. Nucleic Acids Res. 42 (Database-Issue) (2014)
Guillaume Bouvier, Nathalie Duclert-Savatier, Nathan Desdouits, Djalal Meziane-Cherif, Arnaud Blondel, Patrice Courvalin, Michael Nilges, Thérèse E. Malliavin
Functional Motions Modulating VanA Ligand Binding Unraveled by Self-Organizing Maps. J. Chem. Inf. Model. 54 (1) (2014)
Yannick G. Spill, Guillaume Bouvier, Michael Nilges
Erratum: A convective replica-exchange method for sampling new energy basins. J. Comput. Chem. 34 (18) (2013)
Yannick G. Spill, Guillaume Bouvier, Michael Nilges
A convective replica-exchange method for sampling new energy basins. J. Comput. Chem. 34 (2) (2013)
Antonio Mucherino, Carlile Lavor, Therese E. Malliavin, Leo Liberti, Michael Nilges, Nelson Maculan
Influence of Pruning Devices on the Solution of Molecular Distance Geometry Problems. SEA (2011)
Fabien Mareuil, Christophe Blanchet, Therese E. Malliavin, Michael Nilges
Grid computing for improving conformational sampling in NMR structure calculation. Bioinform. 27 (12) (2011)
David Giganti, Hélène Guillemain, Jean-Louis Spadoni, Michael Nilges, Jean-François Zagury, Matthieu Montès
Comparative Evaluation of 3D Virtual Ligand Screening Methods: Impact of the Molecular Alignment on Enrichment. J. Chem. Inf. Model. 50 (6) (2010)
Wolfgang Rieping, Michael Nilges, Michael Habeck
ISD: a software package for Bayesian NMR structure calculation. Bioinform. 24 (8) (2008)
Phineus R. Markwick, Therese E. Malliavin, Michael Nilges
Structural Biology by NMR: Structure, Dynamics, and Interactions. PLoS Comput. Biol. 4 (9) (2008)
Wolfgang Rieping, Michael Habeck, Benjamin Bardiaux, Aymeric Bernard, Therese E. Malliavin, Michael Nilges
ARIA2: Automated NOE assignment and data integration in NMR structure calculation. Bioinform. 23 (3) (2007)
Raik Grünberg, Michael Nilges, Johan Leckner
Biskit - A software platform for structural bioinformatics. Bioinform. 23 (6) (2007)
Jens P. Linge, Michael Habeck, Wolfgang Rieping, Michael Nilges
ARIA: automated NOE assignment and NMR structure calculation. Bioinform. 19 (2) (2003)