Antonio Mucherino

Publication Activity (10 Years)

Years Active: 2008-2024
Publications (10 Years): 42

Top Topics

Multidimensional Scaling

Top Venues

J. Glob. Optim.

Discret. Appl. Math.

Publications

Germano Abud, Jorge Alencar, Carlile Lavor, Leo Liberti, Antonio Mucherino
An impossible combinatorial counting method in distance geometry. Discret. Appl. Math. 354 (2024)
Simon B. Hengeveld, Antonio Mucherino
Variable Neighborhood Search in Hamming Space. LSSC (2023)
Antonio Mucherino
The Coherent Multi-representation Problem with Applications in Structural Biology. IWBBIO (1) (2023)
Antonio Mucherino, Jung-Hsin Lin
The Coherent Multi-representation Problem for Protein Structure Determination. DIS (2023)
Douglas Soares Gonçalves, Antonio Mucherino
A Distance Geometry Procedure Using the Levenberg-Marquardt Algorithm and with Applications in Biology but Not only. IWBBIO (2) (2022)
Andrés D. Báez-Sánchez, Carlile Lavor, Antonio Mucherino
Preface: special issue on optimization in distance geometry. J. Glob. Optim. 83 (1) (2022)
Simon B. Hengeveld, Antonio Mucherino
A GPU approach to distance geometry in 1D: an implementation in C/CUDA. FedCSIS (2022)
Simon B. Hengeveld, Antonio Mucherino
On the Feasible Regions Delimiting Natural Human Postures in a Novel Skeletal Representation. FedCSIS (2022)
Simon B. Hengeveld, Therese E. Malliavin, J. H. Lin, Leo Liberti, Antonio Mucherino
A study on the impact of the distance types involved in protein structure determination by NMR. BIBM (2021)
Germano Abud, Jorge Alencar, Carlile Lavor, Leo Liberti, Antonio Mucherino
An impossible utopia in distance geometry. CoRR (2021)
Antonio Mucherino
binMeta: A New Java Package for Meta-heuristic Searches. LSSC (2021)
Carlile Lavor, Michael Souza, Luiz Mariano Carvalho, Douglas Soares Gonçalves, Antonio Mucherino
Improving the sampling process in the interval Branch-and-Prune algorithm for the discretizable molecular distance geometry problem. Appl. Math. Comput. 389 (2021)
Jérémy Omer, Antonio Mucherino
The Referenced Vertex Ordering Problem: Theory, Applications, and Solution Methods. Open J. Math. Optim. 2 (2021)
Simon B. Hengeveld, N. Rubiano da Silva, Douglas Soares Gonçalves, P. H. Souto Ribeiro, Antonio Mucherino
Solving the One-dimensional Distance Geometry Problem by Optical Computing. CoRR (2021)
Simon B. Hengeveld, Antonio Mucherino
On the Representation of Human Motions and Distance-based Retargeting. FedCSIS (2021)
Simon B. Hengeveld, F. Plastria, Antonio Mucherino, David A. Pelta
A Linear Program for Points of Interest Relocation in Adaptive Maps. GSI (2) (2021)
Antonio Mucherino, Carlile Lavor
Preface: Special issue on distances in optimization and graphs dedicated to the memory of Michel Deza. Optim. Lett. 14 (2) (2020)
Antonio Mucherino, Douglas Soares Gonçalves, Leo Liberti, Jung-Hsin Lin, Carlile Lavor, Nelson Maculan
MD-jeep: a New Release for Discretizable Distance Geometry Problems with Interval Data. FedCSIS (2020)
Antonio Mucherino
An Analysis on the Degrees of Freedom of Binary Representations for Solutions to Discretizable Distance Geometry Problems. WCO@FedCSIS (2020)
Antonio Mucherino, Jérémy Omer, Ludovic Hoyet, Paolo Robuffo Giordano, Franck Multon
An application-based characterization of dynamical distance geometry problems. Optim. Lett. 14 (2) (2020)
Germano Abud, Jorge Alencar, Carlile Lavor, Leo Liberti, Antonio Mucherino
The K-discretization and K-incident graphs for discretizable Distance Geometry. Optim. Lett. 14 (2) (2020)
Antonio Mucherino, Jung-Hsin Lin, Douglas Soares Gonçalves
A Coarse-Grained Representation for Discretizable Distance Geometry with Interval Data. IWBBIO (1) (2019)
Shanfeng Hu, Hubert P. H. Shum, Antonio Mucherino
DSPP: Deep Shape and Pose Priors of Humans. MIG (2019)
Antonio Mucherino, Jung-Hsin Lin
An Efficient Exhaustive Search for the Discretizable Distance Geometry Problem with Interval Data. FedCSIS (2019)
Thérèse E. Malliavin, Antonio Mucherino, Carlile Lavor, Leo Liberti
Systematic Exploration of Protein Conformational Space Using a Distance Geometry Approach. J. Chem. Inf. Model. 59 (10) (2019)
Zhiguang Liu, Antonio Mucherino, Ludovic Hoyet, Franck Multon
Surface based motion retargeting by preserving spatial relationship. MIG (2018)
Felipe Fidalgo, Douglas Soares Gonçalves, Carlile Lavor, Leo Liberti, Antonio Mucherino
A symmetry-based splitting strategy for discretizable distance geometry problems. J. Glob. Optim. 71 (4) (2018)
Antonio Mucherino, Florian Elain, Ludovic Hoyet, Richard Kulpa
Feature Selection in Time-Series Motion Databases. FedCSIS (2018)
Simon J. L. Billinge, Phillip M. Duxbury, Douglas Soares Gonçalves, Carlile Lavor, Antonio Mucherino
Recent results on assigned and unassigned distance geometry with applications to protein molecules and nanostructures. Ann. Oper. Res. 271 (1) (2018)
Antonio Mucherino, Douglas Soares Gonçalves, Antonin Bernardin, Ludovic Hoyet, Franck Multon
A Distance-Based Approach for Human Posture Simulations. FedCSIS (2017)
Antonin Bernardin, Ludovic Hoyet, Antonio Mucherino, Douglas Soares Gonçalves, Franck Multon
Normalized Euclidean distance matrices for human motion retargeting. MIG (2017)
Antonio Mucherino, Douglas Soares Gonçalves
An Approach to Dynamical Distance Geometry. GSI (2017)
Douglas Soares Gonçalves, Antonio Mucherino, Carlile Lavor, Leo Liberti
Recent advances on the interval distance geometry problem. J. Glob. Optim. 69 (3) (2017)
Douglas Soares Gonçalves, Antonio Mucherino
Optimal partial discretization orders for discretizable distance geometry. Int. Trans. Oper. Res. 23 (5) (2016)
Simon J. L. Billinge, Phillip M. Duxbury, Douglas Soares Gonçalves, Carlile Lavor, Antonio Mucherino
Assigned and unassigned distance geometry: applications to biological molecules and nanostructures. 4OR 14 (4) (2016)
Antonio Mucherino, Warley Gramacho, Jung-Hsin Lin, Carlile Lavor
A New Approach to the Discretization of Multidimensional Scaling. FedCSIS (2016)
Stefka Fidanova, Olympia Roeva, Antonio Mucherino, Kristina G. Kapanova
InterCriteria Analysis of Ant Algorithm with Environment Change for GPS Surveying Problem. AIMSA (2016)
Antonio Mucherino
A Pseudo de Bruijn Graph Representation for Discretization Orders for Distance Geometry. IWBBIO (1) (2015)
Antonio Mucherino, Stefka Fidanova, Maria Ganzha
Ant Colony Optimization with environment changes: An application to GPS surveying. FedCSIS (2015)
Andrea Cassioli, Benjamin Bardiaux, Guillaume Bouvier, Antonio Mucherino, Rafael Alves, Leo Liberti, Michael Nilges, Carlile Lavor, Thérèse E. Malliavin
An algorithm to enumerate all possible protein conformations verifying a set of distance constraints. BMC Bioinform. 16 (2015)
Antonio Mucherino
Optimal Discretization Orders for Distance Geometry: A Theoretical Standpoint. LSSC (2015)
Antonio Mucherino, Rosiane de Freitas Rodrigues, Carlile Lavor
Preface. Discret. Appl. Math. 197 (2015)
Douglas Soares Gonçalves, Antonio Mucherino, Carlile Lavor
An adaptive branching scheme for the Branch & Prune algorithm applied to Distance Geometry. FedCSIS (2014)
Douglas Soares Gonçalves, Antonio Mucherino
Discretization orders and efficient computation of cartesian coordinates for distance geometry. Optim. Lett. 8 (7) (2014)
Jeongyeon Seo, Jae-Kwan Kim, Joonghyun Ryu, Carlile Lavor, Antonio Mucherino, Deok-Soo Kim
BetaMDGP: Protein Structure Determination Algorithm Based on the Beta-complex. Trans. Comput. Sci. 22 (2014)
Virginia Costa, Antonio Mucherino, Carlile Lavor, Andrea Cassioli, Luiz Mariano Carvalho, Nelson Maculan
Discretization orders for protein side chains. J. Glob. Optim. 60 (2) (2014)
Leo Liberti, Carlile Lavor, Nelson Maculan, Antonio Mucherino
Euclidean Distance Geometry and Applications. SIAM Rev. 56 (1) (2014)
Leo Liberti, Benoît Masson, Jon Lee, Carlile Lavor, Antonio Mucherino
On the number of realizations of certain Henneberg graphs arising in protein conformation. Discret. Appl. Math. 165 (2014)
Douglas Soares Gonçalves, Antonio Mucherino, Carlile Lavor
Energy-based Pruning Devices for the BP Algorithm applied to Distance Geometry. FedCSIS (2013)
Antonio Mucherino
On the Identification of Discretization Orders for Distance Geometry with Intervals. GSI (2013)
Rafael Alves, Andrea Cassioli, Antonio Mucherino, Carlile Lavor, Leo Liberti
The integration of Clifford Algebra in the iBP algorithm for the DMDGP. IWBBIO (2013)
Carlile Lavor, Leo Liberti, Antonio Mucherino
The interval Branch-and-Prune algorithm for the discretizable molecular distance geometry problem with inexact distances. J. Glob. Optim. 56 (3) (2013)
Carlile Lavor, Leo Liberti, Nelson Maculan, Antonio Mucherino
Recent advances on the Discretizable Molecular Distance Geometry Problem. Eur. J. Oper. Res. 219 (3) (2012)
Carlile Lavor, Jon Lee, Audrey Lee-St. John, Leo Liberti, Antonio Mucherino, Maxim Sviridenko
Discretization orders for distance geometry problems. Optim. Lett. 6 (4) (2012)
Warley Gramacho, Antonio Mucherino, Carlile Lavor, Nelson Maculan
A Parallel BP Algorithm for the Discretizable Distance Geometry Problem. IPDPS Workshops (2012)
Virginia Costa, Antonio Mucherino, Carlile Lavor, Luiz Mariano Carvalho, Nelson Maculan
On suitable orders for discretizing Molecular Distance Geometry Problems related to protein side chains. FedCSIS (2012)
Carlile Lavor, Leo Liberti, Nelson Maculan, Antonio Mucherino
The discretizable molecular distance geometry problem. Comput. Optim. Appl. 52 (1) (2012)
Antonio Mucherino, Carlile Lavor, Leo Liberti
Exploiting Symmetry Properties of the Discretizable molecular Distance Geometry Problem. J. Bioinform. Comput. Biol. 10 (3) (2012)
Antonio Mucherino, Carlile Lavor, Leo Liberti
The discretizable distance geometry problem. Optim. Lett. 6 (8) (2012)
Antonio Mucherino, Martin Fuchs, Xavier Vasseur, Serge Gratton
Variable Neighborhood Search for Robust Optimization and Applications to Aerodynamics. LSSC (2011)
Antonio Mucherino, Carlile Lavor, Therese E. Malliavin, Leo Liberti, Michael Nilges, Nelson Maculan
Influence of Pruning Devices on the Solution of Molecular Distance Geometry Problems. SEA (2011)
Carlile Lavor, Antonio Mucherino, Leo Liberti, Nelson Maculan
On the computation of protein backbones by using artificial backbones of hydrogens. J. Glob. Optim. 50 (2) (2011)
Antonio Mucherino, Carlile Lavor, Leo Liberti
A symmetry-driven BP algorithm for the Discretizable Molecular Distance Geometry Problem. BIBM Workshops (2011)
Leo Liberti, Carlile Lavor, Benoît Masson, Antonio Mucherino
Polynomial cases of the Discretizable Molecular Distance Geometry Problem CoRR (2011)
Antonio Mucherino
Extending the definition of beta-consistent biclustering for feature selection. FedCSIS (2011)
Antonio Mucherino, Inken Wohlers, Gunnar W. Klau, Rumen Andonov
Sparsifying Distance Matrices for Protein-Protein Structure Alignments. CTW (2011)
Antonio Mucherino, Georg Ruß
Recent Developments in Data Mining and Agriculture. ICDM (Workshops) (2011)
Leo Liberti, Benoît Masson, Jon Lee, Carlile Lavor, Antonio Mucherino
On the Number of Solutions of the Discretizable Molecular Distance Geometry Problem. COCOA (2011)
Leo Liberti, Carlile Lavor, Antonio Mucherino, Nelson Maculan
Molecular distance geometry methods: from continuous to discrete. Int. Trans. Oper. Res. 18 (1) (2011)
Leo Liberti, Benoît Masson, Carlile Lavor, Antonio Mucherino
Branch-and-Prune trees with bounded width. CTW (2011)
Leo Liberti, Benoît Masson, Jon Lee, Carlile Lavor, Antonio Mucherino
On the number of solutions of the discretizable molecular distance geometry problem CoRR (2010)
Antonio Mucherino, Carlile Lavor, Leo Liberti, El-Ghazali Talbi
A parallel version of the Branch & Prune algorithm for the Molecular Distance Geometry Problem. AICCSA (2010)
Antonio Mucherino, Sonia Cafieri
A New Heuristic for Feature Selection by Consistent Biclustering CoRR (2010)
Antonio Mucherino, Alejandra Urtubia
Consistent Biclustering and Applications to Agriculture. ICDM (Workshops) (2010)
Antonio Mucherino, Leo Liberti, Carlile Lavor
MD-jeep: An Implementation of a Branch and Prune Algorithm for Distance Geometry Problems. ICMS (2010)
Carlile Lavor, Leo Liberti, Antonio Mucherino
On the solution of molecular distance geometry problems with interval data. BIBM Workshops (2010)
Carlile Lavor, Leo Liberti, Antonio Mucherino, Nelson Maculan
On a discretizable subclass of instances of the molecular distance geometry problem. SAC (2009)
Antonio Mucherino, Carlile Lavor, Nelson Maculan
The Molecular Distance Geometry Problem Applied to Protein Conformations. CTW (2009)
Carlile Lavor, Antonio Mucherino, Leo Liberti, Nelson Maculan
Computing artificial backbones of hydrogen atoms in order to discover protein backbones. IMCSIT (2009)
Antonio Mucherino, Leo Liberti, Carlile Lavor, Nelson Maculan
Comparisons between an exact and a metaheuristic algorithm for the molecular distance geometry problem. GECCO (2009)
Antonio Mucherino, Petraq Papajorgji, Panos M. Pardalos
A survey of data mining techniques applied to agriculture. Oper. Res. 9 (2) (2009)
Antonio Mucherino, Susan Costantini, Daniela di Serafino, Marco D'Apuzzo, Angelo M. Facchiano, Giovanni Colonna
Understanding the role of the topology in protein folding by computational inverse folding experiments. Comput. Biol. Chem. 32 (4) (2008)