Joonghyun Ryu

Publication Activity (10 Years)

Years Active: 2000-2021
Publications (10 Years): 10

Top Topics

Voronoi Diagram

Protein Structure

Coronary Artery

Top Venues

Comput. Aided Des.

J. Glob. Optim.

Appl. Math. Comput.

Publications

Josef Kallrath, Joonghyun Ryu, Chanyoung Song, Mokwon Lee, Deok-Soo Kim
Near optimal minimal convex hulls of disks. J. Glob. Optim. 80 (3) (2021)
Joonghyun Ryu, Mokwon Lee, Donguk Kim, Josef Kallrath, Kokichi Sugihara, Deok-Soo Kim
VOROPACK-D: Real-time disk packing algorithm using Voronoi diagram. Appl. Math. Comput. 375 (2020)
Deok-Soo Kim, Joonghyun Ryu, Youngsong Cho, Mokwon Lee, Jehyun Cha, Chanyoung Song, Sangwha Kim, Roman A. Laskowski, Kokichi Sugihara, Jong Bhak, Seong Eon Ryu
MGOS: A library for molecular geometry and its operating system. Comput. Phys. Commun. 251 (2020)
Jehyun Cha, Joonghyun Ryu, Jin-Ho Choi, Deok-Soo Kim
Medial-ABC: an algorithm for the correspondence between myocardium and coronary artery mesh models based on the medial axis of coronary artery. J. Comput. Des. Eng. 7 (6) (2020)
Nguyen Kieu Linh, Chanyoung Song, Joonghyun Ryu, Thanh An Phan, Nam-Dung Hoang, Deok-Soo Kim
QuickhullDisk: A faster convex hull algorithm for disks. Appl. Math. Comput. 363 (2019)
Deok-Soo Kim, Joonghyun Ryu, Youngsong Cho, Mokwon Lee, Jehyun Cha, Chanyoung Song, Sangwha Kim, Roman A. Laskowski, Kokichi Sugihara, Jong Bhak, Seong Eon Ryu
MGOS: A Library for Molecular Geometry and its Operating System. CoRR (2019)
Mokwon Lee, Qing Fang, Youngsong Cho, Joonghyun Ryu, Ligang Liu, Deok-Soo Kim
Support-free hollowing for 3D printing via Voronoi diagram of ellipses. Comput. Aided Des. 101 (2018)
Jehyun Cha, Joonghyun Ryu, Jin-Ho Choi, Deok-Soo Kim
Fused Segmentation of Geometric Models for Myocardium and Coronary Artery via Medial Axis. CoRR (2017)
Mokwon Lee, Qing Fang, Joonghyun Ryu, Ligang Liu, Deok-Soo Kim
Support-Free Hollowing for 3D Printing via Voronoi Diagram of Ellipses. CoRR (2017)
Joonghyun Ryu, Mokwon Lee, Jehyun Cha, Roman A. Laskowski, Seong Eon Ryu, Deok-Soo Kim
BetaSCPWeb: side-chain prediction for protein structures using Voronoi diagrams and geometry prioritization. Nucleic Acids Res. 44 (Webserver-Issue) (2016)
Joonghyun Ryu, Mokwon Lee, Jehyun Cha, Chanyoung Song, Deok-Soo Kim
BetaSCP2: A Program for the Optimal Prediction of Side-Chains in Proteins. ICMS (2014)
Jeongyeon Seo, Jae-Kwan Kim, Joonghyun Ryu, Carlile Lavor, Antonio Mucherino, Deok-Soo Kim
BetaMDGP: Protein Structure Determination Algorithm Based on the Beta-complex. Trans. Comput. Sci. 22 (2014)
Youngsong Cho, Jae-Kwan Kim, Joonghyun Ryu, Mokwon Lee, Jehyun Cha, Chanyoung Song, Deok-Soo Kim
Molecular Geometry and BULL! CW (2014)
Deok-Soo Kim, Youngsong Cho, Jae-Kwan Kim, Joonghyun Ryu, Mokwon Lee, Jehyun Cha, Chanyoung Song
BULL! - The Molecular Geometry Engine Based on Voronoi Diagram, Quasi-Triangulation, and Beta-Complex. ICMS (2014)
Joonghyun Ryu, Deok-Soo Kim
Protein structure optimization by side-chain positioning via beta-complex. J. Glob. Optim. 57 (1) (2013)
Deok-Soo Kim, Youngsong Cho, Joonghyun Ryu, Jae-Kwan Kim, Donguk Kim
Anomalies in quasi-triangulations and beta-complexes of spherical atoms in molecules. Comput. Aided Des. 45 (1) (2013)
Deok-Soo Kim, Youngsong Cho, Jae-Kwan Kim, Joonghyun Ryu
QTF: Quasi-triangulation file format. Comput. Aided Des. 44 (9) (2012)
Deok-Soo Kim, Joonghyun Ryu, Hayong Shin, Youngsong Cho
Beta-decomposition for the volume and area of the union of three-dimensional balls and their offsets. J. Comput. Chem. 33 (13) (2012)
Youngsong Cho, Jae-Kwan Kim, Chung In Won, Joonghyun Ryu, Chong-Min Kim, Deok-Soo Kim
BetaMol: Molecular Modeling, Analysis, and Visualization Software Based on the Beta-Complex Derived from the Voronoi Diagram. ISVD (2011)
Chong-Min Kim, Chung In Won, Jae-Kwan Kim, Joonghyun Ryu, Jong Bhak, Deok-Soo Kim
Protein-Ligand Docking Based on Beta-Shape. Trans. Comput. Sci. 9 (2010)
Deok-Soo Kim, Youngsong Cho, Joonghyun Ryu, Chong-Min Kim
Topologies of surfaces on molecules and their computation in O(n) time. Comput. Aided Des. 42 (9) (2010)
Deok-Soo Kim, Youngsong Cho, Kokichi Sugihara, Joonghyun Ryu, Donguk Kim
Three-dimensional beta-shapes and beta-complexes via quasi-triangulation. Comput. Aided Des. 42 (10) (2010)
Joonghyun Ryu, Youngsong Cho, Deok-Soo Kim
Triangulation of molecular surfaces. Comput. Aided Des. 41 (6) (2009)
Chong-Min Kim, Chung In Won, Joonghyun Ryu, Jae-Kwan Kim, Jong Bhak, Deok-Soo Kim
Protein-Ligand Docking Based on ss-shape. ISVD (2009)
Joonghyun Ryu, Rhohun Park, Youngsong Cho, Jeongyeon Seo, Deok-Soo Kim
beta-shape Based Computation of Blending Surfaces on a Molecule. ISVD (2007)
Cheol-Hyung Cho, Deok-Soo Kim, Youngsong Cho, Joonghyun Ryu
Upper and lower bounds of op-code probabilities for Edgebreaker. Int. J. Comput. Sci. Eng. 3 (1) (2007)
Joonghyun Ryu, Rhohun Park, Jeongyeon Seo, Chong-Min Kim, Hyun-Chan Lee, Deok-Soo Kim
Real-Time Triangulation of Molecular Surfaces. ICCSA (1) (2007)
Deok-Soo Kim, Bohyung Lee, Chung In Won, Donguk Kim, Joonghyun Ryu, Youngsong Cho, Chong-Min Kim, Sunghoon Lee, Jonghwa Bhak
Multi-Resolution Protein Model. ICCSA (2) (2007)
Joonghyun Ryu, Rhohun Park, Deok-Soo Kim
Molecular surfaces on proteins via beta shapes. Comput. Aided Des. 39 (12) (2007)
Deok-Soo Kim, Jeongyeon Seo, Donguk Kim, Joonghyun Ryu, Cheol-Hyung Cho
Three-dimensional beta shapes. Comput. Aided Des. 38 (11) (2006)
Jeongyeon Seo, Youngsong Cho, Cheol-Hyung Cho, Donguk Kim, Joonghyun Ryu, Deok-Soo Kim
The B-shape and B-complex for three-dimensional spheres. ISVD (2006)
Joonghyun Ryu, Rhohun Park, Deok-Soo Kim
Connolly Surface on an Atomic Structure via Voronoi Diagram of Atoms. J. Comput. Sci. Technol. 21 (2) (2006)
Deok-Soo Kim, Donguk Kim, Youngsong Cho, Joonghyun Ryu, Cheol-Hyung Cho, Joon Young Park, Hyun-Chan Lee
Visualization and Analysis of Protein Structures Using Euclidean Voronoi Diagram of Atoms. ICCSA (3) (2005)
Joonghyun Ryu, Youngsong Cho, Deok-Soo Kim
Transformation of a Dynamic B-Spline Curve into Piecewise Power Basis Representation. International Conference on Computational Science (2) (2002)
Deok-Soo Kim, Joonghyun Ryu, Hyun-Chan Lee, Hayong Shin
The conversion of a dynamic B-spline curve into piecewise polynomials in power form. Comput. Aided Des. 34 (4) (2002)
Deok-Soo Kim, Donguk Kim, Kokichi Sugihara, Joonghyun Ryu
Robust and Fast Algorithm for a Circle Set Voronoi Diagram in a Plane. International Conference on Computational Science (1) (2001)
Deok-Soo Kim, Donguk Kim, Kokichi Sugihara, Joonghyun Ryu
Apollonius Tenth Problem as a Point Location Problem. International Conference on Computational Science (1) (2001)
Deok-Soo Kim, Joonghyun Ryu, Hyun-Chan Lee, Hayong Shin, Joonyoung Park, Taeboom Jang
Fast Conversion of Dynamic B-Spline Curves into a Set of Power Form Polynomial Curves. GMP (2000)