Roman A. Laskowski

Publication Activity (10 Years)

Years Active: 1998-2020
Publications (10 Years): 5

Top Topics

Protein Structural

Operating System

Tandem Mass Spectra

Genome Sequences

Top Venues

Nucleic Acids Res.

PLoS Comput. Biol.

Publications

Rodrigo Ochoa, Mikhail D. Magnitov, Roman A. Laskowski, Pilar Cossio, Janet M. Thornton
An automated protocol for modelling peptide substrates to proteases. BMC Bioinform. 21 (1) (2020)
Deok-Soo Kim, Joonghyun Ryu, Youngsong Cho, Mokwon Lee, Jehyun Cha, Chanyoung Song, Sangwha Kim, Roman A. Laskowski, Kokichi Sugihara, Jong Bhak, Seong Eon Ryu
MGOS: A library for molecular geometry and its operating system. Comput. Phys. Commun. 251 (2020)
Deok-Soo Kim, Joonghyun Ryu, Youngsong Cho, Mokwon Lee, Jehyun Cha, Chanyoung Song, Sangwha Kim, Roman A. Laskowski, Kokichi Sugihara, Jong Bhak, Seong Eon Ryu
MGOS: A Library for Molecular Geometry and its Operating System. CoRR (2019)
James D. Stephenson, Roman A. Laskowski, Andrew Nightingale, Matthew E. Hurles, Janet M. Thornton
VarMap: a web tool for mapping genomic coordinates to protein sequence and structure and retrieving protein structural annotations. Bioinform. 35 (22) (2019)
Joonghyun Ryu, Mokwon Lee, Jehyun Cha, Roman A. Laskowski, Seong Eon Ryu, Deok-Soo Kim
BetaSCPWeb: side-chain prediction for protein structures using Voronoi diagrams and geometry prioritization. Nucleic Acids Res. 44 (Webserver-Issue) (2016)
Jae-Kwan Kim, Youngsong Cho, Mokwon Lee, Roman A. Laskowski, Seong Eon Ryu, Kokichi Sugihara, Deok-Soo Kim
BetaCavityWeb: a webserver for molecular voids and channels. Nucleic Acids Res. 43 (Webserver-Issue) (2015)
Ian Sillitoe, Tony E. Lewis, Alison L. Cuff, Sayoni Das, Paul Ashford, Natalie L. Dawson, Nicholas Furnham, Roman A. Laskowski, David A. Lee, Jonathan G. Lees, Sonja Lehtinen, Romain A. Studer, Janet M. Thornton, Christine A. Orengo
CATH: comprehensive structural and functional annotations for genome sequences. Nucleic Acids Res. 43 (Database-Issue) (2015)
Tjaart A. P. de Beer, Karel Berka, Janet M. Thornton, Roman A. Laskowski
PDBsum additions. Nucleic Acids Res. 42 (Database-Issue) (2014)
Lukás Pravda, Karel Berka, Radka Svobodová Vareková, David Sehnal, Pavel Banás, Roman A. Laskowski, Jaroslav Koca, Michal Otyepka
Anatomy of enzyme channels. BMC Bioinform. 15 (2014)
Tjaart A. P. de Beer, Roman A. Laskowski, Sarah L. Parks, Botond Sipos, Nick Goldman, Janet M. Thornton
Amino Acid Changes in Disease-Associated Variants Differ Radically from Variants Observed in the 1000 Genomes Project Dataset. PLoS Comput. Biol. 9 (12) (2013)
Nicholas Furnham, Ian Sillitoe, Gemma L. Holliday, Alison L. Cuff, Roman A. Laskowski, Christine A. Orengo, Janet M. Thornton
Exploring the Evolution of Novel Enzyme Functions within Structurally Defined Protein Superfamilies. PLoS Comput. Biol. 8 (3) (2012)
Nicholas Furnham, Ian Sillitoe, Gemma L. Holliday, Alison L. Cuff, Syed Asad Rahman, Roman A. Laskowski, Christine A. Orengo, Janet M. Thornton
FunTree: a resource for exploring the functional evolution of structurally defined enzyme superfamilies. Nucleic Acids Res. 40 (Database-Issue) (2012)
Roman A. Laskowski, Mark B. Swindells
LigPlot+: Multiple Ligand-Protein Interaction Diagrams for Drug Discovery. J. Chem. Inf. Model. 51 (10) (2011)
Asif U. Tamuri, Roman A. Laskowski
ArchSchema: a tool for interactive graphing of related Pfam domain architectures. Bioinform. 26 (9) (2010)
Roman A. Laskowski
PDBsum new things. Nucleic Acids Res. 37 (Database-Issue) (2009)
David Talavera, Roman A. Laskowski, Janet M. Thornton
WSsas: a web service for the annotation of functional residues through structural homologues. Bioinform. 25 (9) (2009)
John A. Capra, Roman A. Laskowski, Janet M. Thornton, Mona Singh, Thomas A. Funkhouser
Predicting Protein Ligand Binding Sites by Combining Evolutionary Sequence Conservation and 3D Structure. PLoS Comput. Biol. 5 (12) (2009)
Roman A. Laskowski
Enhancing the functional annotation of PDB structures in PDBsum using key figures extracted from the literature. Bioinform. 23 (14) (2007)
Abdullah Kahraman, Richard J. Morris, Roman A. Laskowski, Janet M. Thornton
Variation of geometrical and physicochemical properties in protein binding pockets and their ligands. BMC Bioinform. 8 (S-8) (2007)
Roman A. Laskowski, James D. Watson, Janet M. Thornton
ProFunc: a server for predicting protein function from 3D structure. Nucleic Acids Res. 33 (Web-Server-Issue) (2005)
Roman A. Laskowski, Victor V. Chistyakov, Janet M. Thornton
PDBsum more: new summaries and analyses of the known 3D structures of proteins and nucleic acids. Nucleic Acids Res. 33 (Database-Issue) (2005)
M. Mar Albà, Roman A. Laskowski, John M. Hancock
Detecting cryptically simple protein sequences using the SIMPLE algorithm. Bioinform. 18 (5) (2002)
Roman A. Laskowski
PDBsum: summaries and analyses of PDB structures. Nucleic Acids Res. 29 (1) (2001)
Nicholas M. Luscombe, Roman A. Laskowski, Janet M. Thornton
Amino acid?base interactions: a three-dimensional analysis of protein?DNA interactions at an atomic level. Nucleic Acids Res. 29 (13) (2001)
John B. O. Mitchell, Roman A. Laskowski, Alexander Alex, Janet M. Thornton
BLEEP - potential of mean force describing protein-ligand interactions: I. Generating potential. J. Comput. Chem. 20 (11) (1999)
John B. O. Mitchell, Roman A. Laskowski, Alexander Alex, Mark J. Forster, Janet M. Thornton
BLEEP - potential of mean force describing protein-ligand interactions: II. Calculation of binding energies and comparison with experimental data. J. Comput. Chem. 20 (11) (1999)
Fabio Zuccotto, Andrew C. R. Martin, Roman A. Laskowski, Janet M. Thornton, Ian H. Gilbert
Dihydrofolate reductase: A potential drug target in trypanosomes and leishmania. J. Comput. Aided Mol. Des. 12 (3) (1998)
Janet M. Thornton, Andrew C. R. Martin, Christine A. Orengo, Duncan Milburn, Roman A. Laskowski
[Invited Lecture] Protein Folds and Functions. German Conference on Bioinformatics (1998)