Carlile Lavor

ORCID

Publication Activity (10 Years)

Years Active: 2000-2024
Publications (10 Years): 49

Top Venues

Publications

Michael Souza, Nilton Maia, Rômulo S. Marques, Carlile Lavor
A Branch-and-Bound Algorithm for the Molecular Ordered Covering Problem. J. Comput. Biol. 31 (6) (2024)
Germano Abud, Jorge Alencar, Carlile Lavor, Leo Liberti, Antonio Mucherino
An impossible combinatorial counting method in distance geometry. Discret. Appl. Math. 354 (2024)
Nektarios A. Valous, Eckhard Hitzer, Salvatore Vitabile, Swanhild Bernstein, Carlile Lavor, Derek Abbott, Maria Elena Luna-Elizarrarás, Wilder Bezerra Lopes
Hypercomplex Signal and Image Processing: Part 1 [From the Guest Editors]. IEEE Signal Process. Mag. 41 (2) (2024)
Leo Liberti, Gabriele Iommazzo, Carlile Lavor, Nelson Maculan
Cycle-based formulations in Distance Geometry. Open J. Math. Optim. 4 (2023)
Jaroslav Hrdina, Dietmar Hildenbrand, Ales Návrat, Christian Steinmetz, Rafael Alves, Carlile Lavor, Petr Vasík, Ivan Eryganov
Quantum Register Algebra: the mathematical language for quantum computing. Quantum Inf. Process. 22 (9) (2023)
Michael Souza, Nilton Maia, Carlile Lavor
The Ordered Covering Problem in Distance Geometry. ISBRA (2023)
Andrés D. Báez-Sánchez, Carlile Lavor, Antonio Mucherino
Preface: special issue on optimization in distance geometry. J. Glob. Optim. 83 (1) (2022)
Carlile Lavor, Franklin L. Marquezino, Andrês Oliveira, Renato Portugal
A quantum approach to the discretizable molecular distance geometry problem. Quantum Inf. Process. 21 (7) (2022)
Phillip M. Duxbury, Carlile Lavor, Leo Liberti, Luiz Leduíno de Salles Neto
Unassigned distance geometry and molecular conformation problems. J. Glob. Optim. 83 (1) (2022)
Rodrigo Labiak, Carlile Lavor, Michael Souza
Distance geometry and protein loop modeling. J. Comput. Chem. 43 (5) (2022)
Carlile Lavor, Rafael Alves, Leandro A. F. Fernandes
Linear and geometric algebra approaches for sphere and spherical shell intersections in Rn. Expert Syst. Appl. 187 (2022)
Luiz Leduíno de Salles Neto, Carlile Lavor, Weldon A. Lodwick
A note on the Cayley-Menger determinant and the Molecular Distance Geometry Problem. Inf. Sci. 559 (2021)
Carlile Lavor, Andrês Oliveira, Wagner Rocha, Michael Souza
On the optimality of finding DMDGP symmetries. Comput. Appl. Math. 40 (3) (2021)
Germano Abud, Jorge Alencar, Carlile Lavor, Leo Liberti, Antonio Mucherino
An impossible utopia in distance geometry. CoRR (2021)
Carlile Lavor, Michael Souza, José Luis Aragón
Orthogonality of isometries in the conformal model of the 3D space. Graph. Model. 114 (2021)
Phillip M. Duxbury, Carlile Lavor, Luiz Leduíno de Salles Neto
A conjecture on a continuous optimization model for the Golomb Ruler Problem. RAIRO Oper. Res. 55 (4) (2021)
Carlile Lavor, Michael Souza, Luiz Mariano Carvalho, Douglas Soares Gonçalves, Antonio Mucherino
Improving the sampling process in the interval Branch-and-Prune algorithm for the discretizable molecular distance geometry problem. Appl. Math. Comput. 389 (2021)
Douglas Soares Gonçalves, Carlile Lavor, Leo Liberti, Michael Souza
DMDGP Subclass of Distance Geometry Problems with Exact Distances. Algorithmica 83 (8) (2021)
Wagner Rocha, Carlile Lavor, Leo Liberti, Thérèse E. Malliavin
Pseudo-dihedral Angles in Proteins Providing a New Description of the Ramachandran Map. GSI (2) (2021)
Leo Liberti, Gabriele Iommazzo, Carlile Lavor, Nelson Maculan
Cycle-based formulations in Distance Geometry. CoRR (2020)
Antonio Mucherino, Carlile Lavor
Preface: Special issue on distances in optimization and graphs dedicated to the memory of Michel Deza. Optim. Lett. 14 (2) (2020)
Antonio Mucherino, Douglas Soares Gonçalves, Leo Liberti, Jung-Hsin Lin, Carlile Lavor, Nelson Maculan
MD-jeep: a New Release for Discretizable Distance Geometry Problems with Interval Data. FedCSIS (2020)
Luiz Leduíno de Salles Neto, Carlile Lavor, Weldon A. Lodwick
A constrained interval approach to the generalized distance geometry problem. Optim. Lett. 14 (2) (2020)
Dietmar Hildenbrand, Christian Steinmetz, Rafael Alves, Jaroslav Hrdina, Carlile Lavor
An Online Calculator for Qubits Based on Geometric Algebra. CGI (2020)
Douglas Soares Gonçalves, Carlile Lavor, Leo Liberti, Michael Souza
DMDGP subclass of Distance Geometry Problems. CoRR (2020)
Germano Abud, Jorge Alencar, Carlile Lavor, Leo Liberti, Antonio Mucherino
The K-discretization and K-incident graphs for discretizable Distance Geometry. Optim. Lett. 14 (2) (2020)
Carlile Lavor, Leo Liberti, Bruce Randall Donald, Bradley Worley, Benjamin Bardiaux, Thérèse E. Malliavin, Michael Nilges
Minimal NMR distance information for rigidity of protein graphs. Discret. Appl. Math. 256 (2019)
Carlile Lavor, Michael Souza, Luiz Mariano Carvalho, Leo Liberti
On the polynomiality of finding KDMDGP re-orders. Discret. Appl. Math. 267 (2019)
Jorge Alencar, Carlile Lavor, Leo Liberti
Realizing Euclidean distance matrices by sphere intersection. Discret. Appl. Math. 256 (2019)
Thérèse E. Malliavin, Antonio Mucherino, Carlile Lavor, Leo Liberti
Systematic Exploration of Protein Conformational Space Using a Distance Geometry Approach. J. Chem. Inf. Model. 59 (10) (2019)
Leo Liberti, Carlile Lavor, Nelson Maculan
A mathematical programming formulation for the Hartree-Fock problem on open-shell systems. Optim. Lett. 13 (2) (2019)
Cláudio P. Santiago, Carlile Lavor, Sérgio Assunção Monteiro, Alberto Krone-Martins
A new algorithm for the small-field astrometric point-pattern matching problem. J. Glob. Optim. 72 (1) (2018)
Felipe Fidalgo, Douglas Soares Gonçalves, Carlile Lavor, Leo Liberti, Antonio Mucherino
A symmetry-based splitting strategy for discretizable distance geometry problems. J. Glob. Optim. 71 (4) (2018)
Bradley Worley, Florent Delhommel, Florence Cordier, Thérèse E. Malliavin, Benjamin Bardiaux, Nicolas Wolff, Michael Nilges, Carlile Lavor, Leo Liberti
Tuning interval Branch-and-Prune for protein structure determination. J. Glob. Optim. 72 (1) (2018)
Simon J. L. Billinge, Phillip M. Duxbury, Douglas Soares Gonçalves, Carlile Lavor, Antonio Mucherino
Recent results on assigned and unassigned distance geometry with applications to protein molecules and nanostructures. Ann. Oper. Res. 271 (1) (2018)
Claudia D'Ambrosio, Ky Khac Vu, Carlile Lavor, Leo Liberti, Nelson Maculan
New Error Measures and Methods for Realizing Protein Graphs from Distance Data. Discret. Comput. Geom. 57 (2) (2017)
Agostinho Agra, Rosa Figueiredo, Carlile Lavor, Nelson Maculan, António Pereira, Cristina Requejo
Feasibility check for the distance geometry problem: an application to molecular conformations. Int. Trans. Oper. Res. 24 (5) (2017)
Michael Souza, Carlile Lavor, Rafael Alves
Modeling the Molecular Distance Geometry Problem Using Dihedral Angles. ISBRA (2017)
Tiago Mendonça da Costa, H. Bouwmeester, Weldon A. Lodwick, Carlile Lavor
Calculating the possible conformations arising from uncertainty in the molecular distance geometry problem using constraint interval analysis. Inf. Sci. 415 (2017)
Douglas Soares Gonçalves, Antonio Mucherino, Carlile Lavor, Leo Liberti
Recent advances on the interval distance geometry problem. J. Glob. Optim. 69 (3) (2017)
Bruno D. Amaro, Leonardo Silva de Lima, Carla Silva Oliveira, Carlile Lavor, Nair Abreu
A note on the sum of the largest signless Laplacian eigenvalues. Electron. Notes Discret. Math. 54 (2016)
Simon J. L. Billinge, Phillip M. Duxbury, Douglas Soares Gonçalves, Carlile Lavor, Antonio Mucherino
Assigned and unassigned distance geometry: applications to biological molecules and nanostructures. 4OR 14 (4) (2016)
Antonio Mucherino, Warley Gramacho, Jung-Hsin Lin, Carlile Lavor
A New Approach to the Discretization of Multidimensional Scaling. FedCSIS (2016)
Carlile Lavor, Marcelo Firer, José Mario Martínez, Leo Liberti
Preface to the Special Issue on Many Faces of Distances. Int. Trans. Oper. Res. 23 (5) (2016)
Rafael Alves, Cipriano de Souza, Carlile Lavor
Advances on the Geometric Algebra approach to the Discretizable Molecular Distance Geometry Problem (DMDGP). CGI (Short Papers) (2016)
Douglas Soares Gonçalves, Márcia A. Gomes-Ruggiero, Carlile Lavor
A projected gradient method for optimization over density matrices. Optim. Methods Softw. 31 (2) (2016)
Leo Liberti, Carlile Lavor
Six mathematical gems from the history of distance geometry. Int. Trans. Oper. Res. 23 (5) (2016)
Claudia D'Ambrosio, Ky Khac Vu, Carlile Lavor, Leo Liberti, Nelson Maculan
New error measures and methods for realizing protein graphs from distance data. CoRR (2016)
Leo Liberti, Carlile Lavor
Open research areas in distance geometry. CoRR (2016)
Leo Liberti, Grzegorz Swirszcz, Carlile Lavor
Distance Geometry on the Sphere. JCDCGG (2015)
Jorge Alencar, Tibérius O. Bonates, Carlile Lavor, Leo Liberti
An algorithm for realizing Euclidean distance matrices. Electron. Notes Discret. Math. 50 (2015)
Andrea Cassioli, Benjamin Bardiaux, Guillaume Bouvier, Antonio Mucherino, Rafael Alves, Leo Liberti, Michael Nilges, Carlile Lavor, Thérèse E. Malliavin
An algorithm to enumerate all possible protein conformations verifying a set of distance constraints. BMC Bioinform. 16 (2015)
Antonio Mucherino, Rosiane de Freitas Rodrigues, Carlile Lavor
Preface. Discret. Appl. Math. 197 (2015)
Andrea Cassioli, Oktay Günlük, Carlile Lavor, Leo Liberti
Discretization vertex orders in distance geometry. Discret. Appl. Math. 197 (2015)
Douglas Soares Gonçalves, Antonio Mucherino, Carlile Lavor
An adaptive branching scheme for the Branch & Prune algorithm applied to Distance Geometry. FedCSIS (2014)
Pedro C. S. Lara, Renato Portugal, Carlile Lavor
A new hybrid classical-quantum algorithm for continuous global optimization problems. J. Glob. Optim. 60 (2) (2014)
Jeongyeon Seo, Jae-Kwan Kim, Joonghyun Ryu, Carlile Lavor, Antonio Mucherino, Deok-Soo Kim
BetaMDGP: Protein Structure Determination Algorithm Based on the Beta-complex. Trans. Comput. Sci. 22 (2014)
Virginia Costa, Antonio Mucherino, Carlile Lavor, Andrea Cassioli, Luiz Mariano Carvalho, Nelson Maculan
Discretization orders for protein side chains. J. Glob. Optim. 60 (2) (2014)
Douglas Soares Gonçalves, Márcia A. Gomes-Ruggiero, Carlile Lavor
Global convergence of diluted iterations in maximum-likelihood quantum tomography. Quantum Inf. Comput. 14 (11-12) (2014)
Jorge Alencar, Tibérius O. Bonates, Carlile Lavor
A Combinatorial Approach to Multidimensional Scaling. BigData Congress (2014)
Leo Liberti, Carlile Lavor, Nelson Maculan, Antonio Mucherino
Euclidean Distance Geometry and Applications. SIAM Rev. 56 (1) (2014)
Leo Liberti, Benoît Masson, Jon Lee, Carlile Lavor, Antonio Mucherino
On the number of realizations of certain Henneberg graphs arising in protein conformation. Discret. Appl. Math. 165 (2014)
Douglas Soares Gonçalves, Antonio Mucherino, Carlile Lavor
Energy-based Pruning Devices for the BP Algorithm applied to Distance Geometry. FedCSIS (2013)
Leo Liberti, Carlile Lavor, Jorge Alencar, Germano Abud
Counting the Number of Solutions of KDMDGP Instances. GSI (2013)
Rafael Alves, Andrea Cassioli, Antonio Mucherino, Carlile Lavor, Leo Liberti
The integration of Clifford Algebra in the iBP algorithm for the DMDGP. IWBBIO (2013)
Silas Sallaume, Simone de Lima Martins, Luiz Satoru Ochi, Warley Gramacho Da Silva, Carlile Lavor, Leo Liberti
A discrete search algorithm for finding the structure of protein backbones and side chains. Int. J. Bioinform. Res. Appl. 9 (3) (2013)
Carlile Lavor, Leo Liberti, Antonio Mucherino
The interval Branch-and-Prune algorithm for the discretizable molecular distance geometry problem with inexact distances. J. Glob. Optim. 56 (3) (2013)
Michael Souza, Carlile Lavor, Albert Muritiba, Nelson Maculan
Solving the molecular distance geometry problem with inaccurate distance data. BMC Bioinform. 14 (S-9) (2013)
Douglas Soares Gonçalves, Márcia A. Gomes-Ruggiero, Carlile Lavor, Osvaldo Jiménez Farias, P. H. Souto Ribeiro
Local solutions of maximum likelihood estimation in quantum state tomography. Quantum Inf. Comput. 12 (9-10) (2012)
Carlile Lavor, Leo Liberti, Nelson Maculan, Antonio Mucherino
Recent advances on the Discretizable Molecular Distance Geometry Problem. Eur. J. Oper. Res. 219 (3) (2012)
Carlile Lavor, Jon Lee, Audrey Lee-St. John, Leo Liberti, Antonio Mucherino, Maxim Sviridenko
Discretization orders for distance geometry problems. Optim. Lett. 6 (4) (2012)
Warley Gramacho, Antonio Mucherino, Carlile Lavor, Nelson Maculan
A Parallel BP Algorithm for the Discretizable Distance Geometry Problem. IPDPS Workshops (2012)
Virginia Costa, Antonio Mucherino, Carlile Lavor, Luiz Mariano Carvalho, Nelson Maculan
On suitable orders for discretizing Molecular Distance Geometry Problems related to protein side chains. FedCSIS (2012)
Carlile Lavor, Leo Liberti, Nelson Maculan, Antonio Mucherino
The discretizable molecular distance geometry problem. Comput. Optim. Appl. 52 (1) (2012)
Antonio Mucherino, Carlile Lavor, Leo Liberti
Exploiting Symmetry Properties of the Discretizable molecular Distance Geometry Problem. J. Bioinform. Comput. Biol. 10 (3) (2012)
Antonio Mucherino, Carlile Lavor, Leo Liberti
The discretizable distance geometry problem. Optim. Lett. 6 (8) (2012)
Antonio Mucherino, Carlile Lavor, Therese E. Malliavin, Leo Liberti, Michael Nilges, Nelson Maculan
Influence of Pruning Devices on the Solution of Molecular Distance Geometry Problems. SEA (2011)
Carlile Lavor, Antonio Mucherino, Leo Liberti, Nelson Maculan
On the computation of protein backbones by using artificial backbones of hydrogens. J. Glob. Optim. 50 (2) (2011)
Antonio Mucherino, Carlile Lavor, Leo Liberti
A symmetry-driven BP algorithm for the Discretizable Molecular Distance Geometry Problem. BIBM Workshops (2011)
Leo Liberti, Carlile Lavor, Benoît Masson, Antonio Mucherino
Polynomial cases of the Discretizable Molecular Distance Geometry Problem CoRR (2011)
Michael Souza, Adilson Elias Xavier, Carlile Lavor, Nelson Maculan
Hyperbolic smoothing and penalty techniques applied to molecular structure determination. Oper. Res. Lett. 39 (6) (2011)
Carlile Lavor, Leo Liberti, Nelson Maculan
A note on "A branch-and-prune algorithm for the molecular distance geometry problem". Int. Trans. Oper. Res. 18 (6) (2011)
Leo Liberti, Benoît Masson, Jon Lee, Carlile Lavor, Antonio Mucherino
On the Number of Solutions of the Discretizable Molecular Distance Geometry Problem. COCOA (2011)
Leo Liberti, Carlile Lavor, Antonio Mucherino, Nelson Maculan
Molecular distance geometry methods: from continuous to discrete. Int. Trans. Oper. Res. 18 (1) (2011)
Leo Liberti, Benoît Masson, Carlile Lavor, Antonio Mucherino
Branch-and-Prune trees with bounded width. CTW (2011)
Leo Liberti, Benoît Masson, Jon Lee, Carlile Lavor, Antonio Mucherino
On the number of solutions of the discretizable molecular distance geometry problem CoRR (2010)
Antonio Mucherino, Carlile Lavor, Leo Liberti, El-Ghazali Talbi
A parallel version of the Branch & Prune algorithm for the Molecular Distance Geometry Problem. AICCSA (2010)
Antonio Mucherino, Leo Liberti, Carlile Lavor
MD-jeep: An Implementation of a Branch and Prune Algorithm for Distance Geometry Problems. ICMS (2010)
Carlile Lavor, Leo Liberti, Antonio Mucherino
On the solution of molecular distance geometry problems with interval data. BIBM Workshops (2010)
Leo Liberti, Carlile Lavor, Nelson Maculan, Fabrizio Marinelli
Double variable neighbourhood search with smoothing for the molecular distance geometry problem. J. Glob. Optim. 43 (2-3) (2009)
Carlile Lavor, Leo Liberti, Antonio Mucherino, Nelson Maculan
On a discretizable subclass of instances of the molecular distance geometry problem. SAC (2009)
Antonio Mucherino, Carlile Lavor, Nelson Maculan
The Molecular Distance Geometry Problem Applied to Protein Conformations. CTW (2009)
Carlile Lavor, Antonio Mucherino, Leo Liberti, Nelson Maculan
Computing artificial backbones of hydrogen atoms in order to discover protein backbones. IMCSIT (2009)
Antonio Mucherino, Leo Liberti, Carlile Lavor, Nelson Maculan
Comparisons between an exact and a metaheuristic algorithm for the molecular distance geometry problem. GECCO (2009)
Leo Liberti, Carlile Lavor, Nelson Maculan, Marco Antonio Chaer Nascimento
Reformulation in mathematical programming: An application to quantum chemistry. Discret. Appl. Math. 157 (6) (2009)
Leo Liberti, Carlile Lavor, Nelson Maculan
A Branch-and-Prune algorithm for the Molecular Distance Geometry Problem. Int. Trans. Oper. Res. 15 (1) (2008)
Milan Drazic, Carlile Lavor, Nelson Maculan, Nenad Mladenovic
A continuous variable neighborhood search heuristic for finding the three-dimensional structure of a molecule. Eur. J. Oper. Res. 185 (3) (2008)
Ricardo dos Santos Carvalho, Carlile Lavor, Fábio Protti
Extending the geometric build-up algorithm for the molecular distance geometry problem. Inf. Process. Lett. 108 (4) (2008)
Helio J. C. Barbosa, Carlile Lavor, Fernanda M. P. Raupp
A GA-Simplex Hybrid Algorithm for Global Minimization of Molecular Potential Energy Functions. Ann. Oper. Res. 138 (1) (2005)
Carlile Lavor, Nelson Maculan
A Function to Test Methods Applied to Global Minimization of Potential Energy of Molecules. Numer. Algorithms 35 (2-4) (2004)

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Publication Activity (10 Years)

Top Topics

Top Venues

Carlile Lavor