Hamed Khakzad

Publication Activity (10 Years)

Years Active: 2016-2023
Publications (10 Years): 5

Top Topics

Mass Spectrometry Data

Motif Discovery

Top Venues

PLoS Comput. Biol.

Comput. Biol. Medicine

Publications

Carlos Gueto-Tettay, Di Tang, Lotta Happonen, Moritz Heusel, Hamed Khakzad, Johan Malmström, Lars Malmström
Multienzyme deep learning models improve peptide de novo sequencing by mass spectrometry proteomics. PLoS Comput. Biol. 19 (1) (2023)
Hamed Khakzad, Lotta Happonen, Johan Malmström, Lars Malmström
Cheetah-MS: a web server to model protein complexes using tandem cross-linking mass spectrometry data. Bioinform. 37 (24) (2021)
Hamed Khakzad, Lotta Happonen, Yasaman Karami, Sounak Chowdhury, Gizem Ertürk Bergdahl, Michael Nilges, Guy Tran Van Nhieu, Johan Malmström, Lars Malmström
Structural determination of Streptococcus pyogenes M1 protein interactions with human immunoglobulin G using integrative structural biology. PLoS Comput. Biol. 17 (1) (2021)
Hamed Khakzad, Johan Malmström, Lars Malmström
Greedy de novo motif discovery to construct motif repositories for bacterial proteomes. BMC Bioinform. (4) (2019)
Niloofar Niknam, Hamed Khakzad, Seyed Shahriar Arab, Hossein Naderi-manesh
PDB2Graph: A toolbox for identifying critical amino acids map in proteins based on graph theory. Comput. Biol. Medicine 72 (2016)