Lars Malmström

Publication Activity (10 Years)

Years Active: 2005-2023
Publications (10 Years): 8

Top Topics

Biological Data

Motif Discovery

Systems Biology

Mass Spectrometry Data

Top Venues

PLoS Comput. Biol.

Concurr. Comput. Pract. Exp.

Publications

Carlos Gueto-Tettay, Di Tang, Lotta Happonen, Moritz Heusel, Hamed Khakzad, Johan Malmström, Lars Malmström
Multienzyme deep learning models improve peptide de novo sequencing by mass spectrometry proteomics. PLoS Comput. Biol. 19 (1) (2023)
Hamed Khakzad, Lotta Happonen, Johan Malmström, Lars Malmström
Cheetah-MS: a web server to model protein complexes using tandem cross-linking mass spectrometry data. Bioinform. 37 (24) (2021)
Hamed Khakzad, Lotta Happonen, Yasaman Karami, Sounak Chowdhury, Gizem Ertürk Bergdahl, Michael Nilges, Guy Tran Van Nhieu, Johan Malmström, Lars Malmström
Structural determination of Streptococcus pyogenes M1 protein interactions with human immunoglobulin G using integrative structural biology. PLoS Comput. Biol. 17 (1) (2021)
Hamed Khakzad, Johan Malmström, Lars Malmström
Greedy de novo motif discovery to construct motif repositories for bacterial proteomes. BMC Bioinform. (4) (2019)
Katherine Wolstencroft, Olga Krebs, Jacky L. Snoep, Natalie J. Stanford, Finn Bacall, Martin Golebiewski, Rostyk Kuzyakiv, Quyen Nguyen, Stuart Owen, Stian Soiland-Reyes, Jakub Straszewski, David D. van Niekerk, Alan R. Williams, Lars Malmström, Bernd Rinn, Wolfgang Müller, Carole A. Goble
FAIRDOMHub: a repository and collaboration environment for sharing systems biology research. Nucleic Acids Res. 45 (Database-Issue) (2017)
Hannes L. Röst, George Rosenberger, Ruedi Aebersold, Lars Malmström
Efficient visualization of high-throughput targeted proteomics experiments: TAPIR. Bioinform. 31 (14) (2015)
Johan Teleman, Hannes L. Röst, George Rosenberger, Uwe Schmitt, Lars Malmström, Johan Malmström, Fredrik Levander
DIANA - algorithmic improvements for analysis of data-independent acquisition MS data. Bioinform. 31 (4) (2015)
Peter Z. Kunszt, Lorenz Blum, Béla Hullár, Emanuel Schmid, Adam Srebniak, Witold Wolski, Bernd Rinn, Franz-Josef Elmer, Chandrasekhar Ramakrishnan, Andreas Quandt, Lars Malmström
iPortal: the swiss grid proteomics portal: Requirements and new features based on experience and usability considerations. Concurr. Comput. Pract. Exp. 27 (2) (2015)
George Rosenberger, Christina Ludwig, Hannes L. Röst, Ruedi Aebersold, Lars Malmström
aLFQ: an R-package for estimating absolute protein quantities from label-free LC-MS/MS proteomics data. Bioinform. 30 (17) (2014)
Peter Z. Kunszt, Lorenz Blum, Béla Hullár, Emanuel Schmid, Adam Srebniak, Witold Wolski, Bernd Rinn, Franz-Josef Elmer, Chandrasekhar Ramakrishnan, Andreas Quandt, Lars Malmström
Improving the Swiss Grid Proteomics Portal: Requirements and new Features based on Experience and Usability Considerations. IWSG (2013)
Abdullah Kahraman, Lars Malmström, Ruedi Aebersold
Xwalk: computing and visualizing distances in cross-linking experiments. Bioinform. 27 (15) (2011)
Angela Bauch, Izabela Adamczyk, Piotr Buczek, Franz-Josef Elmer, Kaloyan Enimanev, Pawel Glyzewski, Manuel Kohler, Tomasz Pylak, Andreas Quandt, Chandrasekhar Ramakrishnan, Christian Beisel, Lars Malmström, Ruedi Aebersold, Bernd Rinn
openBIS: a flexible framework for managing and analyzing complex data in biology research. BMC Bioinform. 12 (2011)
Peter Z. Kunszt, Lars Malmström, Nicola Fantini, Wibke Sudholt, Marcel Lautenschlager, Roland Reifler, Stefan Ruckstuhl
Accelerating 3D Protein Modeling Using Cloud Computing: Using Rosetta as a Service on the IBM SmartCloud. e-Science Workshops (2011)
Lars Malmström, György Marko-Varga, Gunilla Westergren-Thorsson, Thomas Laurell, Johan Malmström
2DDB - a bioinformatics solution for analysis of quantitative proteomics data. BMC Bioinform. 7 (2006)
Michael Riffle, Lars Malmström, Trisha N. Davis
The Yeast Resource Center Public Data Repository. Nucleic Acids Res. 33 (Database-Issue) (2005)