Hervé Ménager

Publication Activity (10 Years)

Years Active: 2005-2023
Publications (10 Years): 18

Top Topics

Protein Interaction

Poses Challenges

Top Venues

Nucleic Acids Res.

Publications

Carole A. Goble, Finn Bacall, Stian Soiland-Reyes, Stuart Owen, Ignacio Eguinoa, Bert Droesbeke, Hervé Ménager, Laura Rodríguez-Navas, José María Fernández, Björn A. Grüning, Simone Leo, Luca Pireddu, Michael R. Crusoe, Johan Gustafsson, Salvador Capella-Gutiérrez, Frederik Coppens
The EOSC-Life Workflow Collaboratory for the Life Sciences. CoRDI (2023)
Francesco P. Panei, Rachel Torchet, Hervé Ménager, Paraskevi Gkeka, Massimiliano Bonomi
HARIBOSS: a curated database of RNA-small molecules structures to aid rational drug design. Bioinform. 38 (17) (2022)
Daniel Garijo, Hervé Ménager, Lorraine J. Hwang, Ana Trisovic, Michael Hucka, Thomas Morrell, Alice Allen
Nine best practices for research software registries and repositories. PeerJ Comput. Sci. 8 (2022)
Michael R. Crusoe, Sanne Abeln, Alexandru Iosup, Peter Amstutz, John Chilton, Nebojsa Tijanic, Hervé Ménager, Stian Soiland-Reyes, Bogdan Gavrilovic, Carole A. Goble, The Cwl Community
Methods included. Commun. ACM 65 (6) (2022)
Perrine Paul-Gilloteaux, Sébastien Tosi, Jean-Karim Hériché, Alban Gaignard, Hervé Ménager, Raphaël Marée, Volker Bäcker, Anna H. Klemm, Matús Kalas, Chong Zhang, Kota Miura, Julien Colombelli
Bioimage analysis workflows: community resources to navigate through a complex ecosystem. F1000Research 10 (2021)
Michael R. Crusoe, Sanne Abeln, Alexandru Iosup, Peter Amstutz, John Chilton, Nebojsa Tijanic, Hervé Ménager, Stian Soiland-Reyes, Carole A. Goble
Methods Included: Standardizing Computational Reuse and Portability with the Common Workflow Language. CoRR (2021)
Anna-Lena Lamprecht, Magnus Palmblad, Jon C. Ison, Veit Schwämmle, Mohammad Sadnan Al Manir, Ilkay Altintas, Christopher J. O. Baker, Ammar Ben Hadj Amor, Salvador Capella-Gutiérrez, Paulos Charonyktakis, Michael R. Crusoe, Yolanda Gil, Carole A. Goble, Timothy J. Griffin, Paul Groth, Hans Ienasescu, Pratik D. Jagtap, Matús Kalas, Vedran Kasalica, Alireza Khanteymoori, Tobias Kuhn, Hailiang Mei, Hervé Ménager, Steffen Möller, Robin A. Richardson, Vincent Robert, Stian Soiland-Reyes, Robert Stevens, Szaniszlo Szoke, Suzan Verberne, Aswin Verhoeven, Katherine Wolstencroft
Perspectives on automated composition of workflows in the life sciences. F1000Research 10 (2021)
Rachel Torchet, Karen Druart, Luis Checa Ruano, Alexandra Moine-Franel, Hélène Borges, Olivia Doppelt-Azeroual, Bryan Brancotte, Fabien Mareuil, Michael Nilges, Hervé Ménager, Olivier Sperandio
The iPPI-DB initiative: a community-centered database of protein-protein interaction modulators. Bioinform. 37 (1) (2021)
Quentin Lamy-Besnier, Bryan Brancotte, Hervé Ménager, Laurent Debarbieux
Viral Host Range database, an online tool for recording, analyzing and disseminating virus-host interactions. Bioinform. 37 (17) (2021)
Fabrice Allain, Fabien Mareuil, Hervé Ménager, Michael Nilges, Benjamin Bardiaux
ARIAweb: a server for automated NMR structure calculation. Nucleic Acids Res. 48 (Webserver-Issue) (2020)
Alain Monteil, Alejandra N. González-Beltrán, Alexandros Ioannidis, Alice Allen, Allen Lee, Anita E. Bandrowski, Bruce E. Wilson, Bryce D. Mecum, Cai Fan Du, Carly Robinson, Daniel Garijo, Daniel S. Katz, David Long, Genevieve Milliken, Hervé Ménager, Jessica Hausman, Jurriaan H. Spaaks, Katrina Fenlon, Kristin Vanderbilt, Lorraine J. Hwang, Lynn Davis, Martin Fenner, Michael R. Crusoe, Michael Hucka, Mingfang Wu, Neil P. Chue Hong, Peter J. Teuben, Shelley Stall, Stephan Druskat, Ted Carnevale, Thomas Morrell
Nine Best Practices for Research Software Registries and Repositories: A Concise Guide. CoRR (2020)
Jon C. Ison, Hervé Ménager, Bryan Brancotte, Erik Jaaniso, Ahto Salumets, Tomás Racek, Anna-Lena Lamprecht, Magnus Palmblad, Matús Kalas, Piotr Chmura, John M. Hancock, Veit Schwämmle, Hans-Ioan Ienasescu
Community curation of bioinformatics software and data resources. Briefings Bioinform. 21 (5) (2020)
Björn A. Grüning, Olivier Sallou, Pablo A. Moreno, Felipe da Veiga Leprevost, Hervé Ménager, Dan Søndergaard, Hannes L. Röst, Timo Sachsenberg, Brian O'Connor, Fábio Madeira, Victoria Dominguez Del Angel, Michael R. Crusoe, Susheel Varma, Daniel J. Blankenberg, Rafael C. Jiménez, Daniel Blankenberg, Yasset Pérez-Riverol
Recommendations for the packaging and containerizing of bioinformatics software. F1000Research 7 (2018)
Bryan Brancotte, Christophe Blanchet, Hervé Ménager
A reusable tree-based web-visualization to browse EDAM ontology, and contribute to it. J. Open Source Softw. 3 (27) (2018)
Sarah Cohen Boulakia, Khalid Belhajjame, Olivier Collin, Jérôme Chopard, Christine Froidevaux, Alban Gaignard, Konrad Hinsen, Pierre Larmande, Yvan Le Bras, Frédéric Lemoine, Fabien Mareuil, Hervé Ménager, Christophe Pradal, Christophe Blanchet
Scientific workflows for computational reproducibility in the life sciences: Status, challenges and opportunities. Future Gener. Comput. Syst. 75 (2017)
Kenzo-Hugo Hillion, Ivan Kuzmin, Anton Khodak, Eric Rasche, Michael R. Crusoe, Hedi Peterson, Jon C. Ison, Hervé Ménager
Using bio.tools to generate and annotate workbench tool descriptions. F1000Research 6 (2017)
Jon C. Ison, Kristoffer Rapacki, Hervé Ménager, Matús Kalas, Emil Rydza, Piotr Chmura, Christian Anthon, Niall Beard, Karel Berka, Dan M. Bolser, Tim Booth, Anthony Bretaudeau, Jan Brezovsky, Rita Casadio, Gianni Cesareni, Frederik Coppens, Michael Cornell, Gianmauro Cuccuru, Kristian Davidsen, Gianluca Della Vedova, Tunca Dogan, Olivia Doppelt-Azeroual, Laura Emery, Elisabeth Gasteiger, Thomas Gatter, Tatyana Goldberg, Marie Grosjean, Björn A. Grüning, Manuela Helmer-Citterich, Hans Ienasescu, Vassilios Ioannidis, Martin Closter Jespersen, Rafael C. Jimenez, Nick S. Juty, Peter Juvan, Maximilian Koch, Camille Laibe, Jing-Woei Li, Luana Licata, Fabien Mareuil, Ivan Micetic, Rune Møllegaard Friborg, Sébastien Moretti, Chris Morris, Steffen Möller, Aleksandra Nenadic, Hedi Peterson, Giuseppe Profiti, Peter M. Rice, Paolo Romano, Paola Roncaglia, Rabie Saidi, Andrea Schafferhans, Veit Schwämmle, Callum Smith, Maria Maddalena Sperotto, Heinz Stockinger, Radka Svobodová Vareková, Silvio C. E. Tosatto, Victor de la Torre, Paolo Uva, Allegra Via, Guy Yachdav, Federico Zambelli, Gert Vriend, Burkhard Rost, Helen E. Parkinson, Peter Løngreen, Søren Brunak
Tools and data services registry: a community effort to document bioinformatics resources. Nucleic Acids Res. 44 (Database-Issue) (2016)
Hervé Ménager, Matús Kalas, Kristoffer Rapacki, Jon C. Ison
Using registries to integrate bioinformatics tools and services into workbench environments. Int. J. Softw. Tools Technol. Transf. 18 (6) (2016)
François Moreews, Olivier Sallou, Hervé Ménager, Yvan Le Bras, Cyril Monjeaud, Christophe Blanchet, Olivier Collin
BioShaDock: a community driven bioinformatics shared Docker-based tools registry. F1000Research 4 (2015)
Hervé Ménager, Vivek Gopalan, Bertrand Néron, Sandrine Larroudé, Julien Maupetit, Adrien Saladin, Pierre Tufféry, Yentram Huyen, Bernard Caudron
Bioinformatics Applications Discovery and Composition with the Mobyle Suite and MobyleNet. RED (2010)
Edouard Strauser, Mikaël Naveau, Hervé Ménager, Julien Maupetit, Zoé Lacroix, Pierre Tufféry
Semantic Map for Structural Bioinformatics: Enhanced Service Discovery Based on High Level Concept Ontology. RED (2010)
Bertrand Néron, Hervé Ménager, Corinne Maufrais, Nicolas Joly, Julien Maupetit, Sébastien Letort, Sébastien Carrère, Pierre Tufféry, Catherine Letondal
Mobyle: a new full web bioinformatics framework. Bioinform. 25 (22) (2009)
Hervé Ménager, Zoé Lacroix, Pierre Tufféry
Bioinformatics Services Discovery Using Ontology Classification. IEEE SCW (2007)
Hervé Ménager, Zoé Lacroix
A Workflow Engine for the Execution of Scientific Protocols. ICDE Workshops (2006)
Pierre Tufféry, Zoé Lacroix, Hervé Ménager
Semantic Map of Services for Structural Bioinformatics. SSDBM (2006)
Zoé Lacroix, Hervé Ménager
SemanticBio: Building Conceptual Scientific Workflows over Web Services. DILS (2005)
Zoé Lacroix, Sumedha Gholba, Hervé Ménager
BioMap: Discovering Schema Mapping Using Ontologies. CSB Workshops (2005)