Massimiliano Bonomi

Publication Activity (10 Years)

Years Active: 2009-2022
Publications (10 Years): 3

Top Topics

Scientific Fields

Scoring Function

Top Venues

PLoS Comput. Biol.

Comput. Phys. Commun.

J. Chem. Inf. Model.

Publications

Francesco P. Panei, Rachel Torchet, Hervé Ménager, Paraskevi Gkeka, Massimiliano Bonomi
HARIBOSS: a curated database of RNA-small molecules structures to aid rational drug design. Bioinform. 38 (17) (2022)
James S. Fraser, Kresten Lindorff-Larsen, Massimiliano Bonomi
What Will Computational Modeling Approaches Have to Say in the Era of Atomistic Cryo-EM Data? J. Chem. Inf. Model. 60 (5) (2020)
Massimiliano Bonomi, Carlo Camilloni
Integrative structural and dynamical biology with PLUMED-ISDB. Bioinform. 33 (24) (2017)
Claire Colas, Christof Grewer, Nicholas James Otte, Armanda Gameiro, Thomas Albers, Kurnvir Singh, Helen Shere, Massimiliano Bonomi, Jeff Holst, Avner Schlessinger
Ligand Discovery for the Alanine-Serine-Cysteine Transporter (ASCT2, SLC1A5) from Homology Modeling and Virtual Screening. PLoS Comput. Biol. 11 (10) (2015)
Gareth A. Tribello, Massimiliano Bonomi, Davide Branduardi, Carlo Camilloni, Giovanni Bussi
PLUMED 2: New feathers for an old bird. Comput. Phys. Commun. 185 (2) (2014)
Lili X. Peng, Monica T. Hsu, Massimiliano Bonomi, David A. Agard, Matthew P. Jacobson
The Free Energy Profile of Tubulin Straight-Bent Conformational Changes, with Implications for Microtubule Assembly and Drug Discovery. PLoS Comput. Biol. 10 (2) (2014)
Adriana Pietropaolo, Davide Branduardi, Massimiliano Bonomi, Michele Parrinello
A chirality-based metrics for free-energy calculations in biomolecular systems. J. Comput. Chem. 32 (12) (2011)
Massimiliano Bonomi, Davide Branduardi, Giovanni Bussi, Carlo Camilloni, Davide Provasi, Paolo Raiteri, Davide Donadio, Fabrizio Marinelli, Fabio Pietrucci, Ricardo A. Broglia, Michele Parrinello
PLUMED: A portable plugin for free-energy calculations with molecular dynamics. Comput. Phys. Commun. 180 (10) (2009)
Massimiliano Bonomi, Alessandro Barducci, Michele Parrinello
Reconstructing the equilibrium Boltzmann distribution from well-tempered metadynamics. J. Comput. Chem. 30 (11) (2009)