Sébastien Moretti

Publication Activity (10 Years)

Years Active: 2006-2021
Publications (10 Years): 6

Top Topics

Metabolic Networks

Chemical Reactions

Saccharomyces Cerevisiae

Top Venues

Nucleic Acids Res.

Publications

Sébastien Moretti, T. Van Du Tran, Florence Mehl, Mark Ibberson, Marco Pagni
MetaNetX/MNXref: unified namespace for metabolites and biochemical reactions in the context of metabolic models. Nucleic Acids Res. 49 (Database-Issue) (2021)
Frederic B. Bastian, Julien Roux, Anne Niknejad, Aurélie Comte, Sara S. Fonseca Costa, Tarcisio Mendes de Farias, Sébastien Moretti, Gilles Parmentier, Valentine Rech de Laval, Marta Rosikiewicz, Julien Wollbrett, Amina Echchiki, Angélique Escoriza, Walid H. Gharib, Mar Gonzales-Porta, Yohan Jarosz, Balazs Laurenczy, Philippe Moret, Emilie Person, Patrick Roelli, Komal Sanjeev, Mathieu Seppey, Marc Robinson-Rechavi
The Bgee suite: integrated curated expression atlas and comparative transcriptomics in animals. Nucleic Acids Res. 49 (Database-Issue) (2021)
T. Van Du Tran, Sébastien Moretti, Alix T. Coste, Sara Amorim-Vaz, Dominique Sanglard, Marco Pagni
Condition-specific series of metabolic sub-networks and its application for gene set enrichment analysis. Bioinform. 35 (13) (2019)
Anne Morgat, Thierry Lombardot, Kristian B. Axelsen, Lucila Aimo, Anne Niknejad, Nevila Hyka-Nouspikel, Elisabeth Coudert, Monica Pozzato, Marco Pagni, Sébastien Moretti, Steven Rosanoff, Joseph Onwubiko, Lydie Bougueleret, Ioannis Xenarios, Nicole Redaschi, Alan Bridge
Updates in Rhea - an expert curated resource of biochemical reactions. Nucleic Acids Res. 45 (Database-Issue) (2017)
Jon C. Ison, Kristoffer Rapacki, Hervé Ménager, Matús Kalas, Emil Rydza, Piotr Chmura, Christian Anthon, Niall Beard, Karel Berka, Dan M. Bolser, Tim Booth, Anthony Bretaudeau, Jan Brezovsky, Rita Casadio, Gianni Cesareni, Frederik Coppens, Michael Cornell, Gianmauro Cuccuru, Kristian Davidsen, Gianluca Della Vedova, Tunca Dogan, Olivia Doppelt-Azeroual, Laura Emery, Elisabeth Gasteiger, Thomas Gatter, Tatyana Goldberg, Marie Grosjean, Björn A. Grüning, Manuela Helmer-Citterich, Hans Ienasescu, Vassilios Ioannidis, Martin Closter Jespersen, Rafael C. Jimenez, Nick S. Juty, Peter Juvan, Maximilian Koch, Camille Laibe, Jing-Woei Li, Luana Licata, Fabien Mareuil, Ivan Micetic, Rune Møllegaard Friborg, Sébastien Moretti, Chris Morris, Steffen Möller, Aleksandra Nenadic, Hedi Peterson, Giuseppe Profiti, Peter M. Rice, Paolo Romano, Paola Roncaglia, Rabie Saidi, Andrea Schafferhans, Veit Schwämmle, Callum Smith, Maria Maddalena Sperotto, Heinz Stockinger, Radka Svobodová Vareková, Silvio C. E. Tosatto, Victor de la Torre, Paolo Uva, Allegra Via, Guy Yachdav, Federico Zambelli, Gert Vriend, Burkhard Rost, Helen E. Parkinson, Peter Løngreen, Søren Brunak
Tools and data services registry: a community effort to document bioinformatics resources. Nucleic Acids Res. 44 (Database-Issue) (2016)
Sébastien Moretti, Olivier Martin, T. Van Du Tran, Alan Bridge, Anne Morgat, Marco Pagni
MetaNetX/MNXref - reconciliation of metabolites and biochemical reactions to bring together genome-scale metabolic networks. Nucleic Acids Res. 44 (Database-Issue) (2016)
Sébastien Moretti, Balazs Laurenczy, Walid H. Gharib, Briséïs Castella, Arnold Kuzniar, Hannes Schabauer, Romain A. Studer, Mario Valle, Nicolas Salamin, Heinz Stockinger, Marc Robinson-Rechavi
Selectome update: quality control and computational improvements to a database of positive selection. Nucleic Acids Res. 42 (Database-Issue) (2014)
Thomas Bernard, Alan Bridge, Anne Morgat, Sébastien Moretti, Ioannis Xenarios, Marco Pagni
Reconciliation of metabolites and biochemical reactions for metabolic networks. Briefings Bioinform. 15 (1) (2014)
Mathias Ganter, Thomas Bernard, Sébastien Moretti, Jörg Stelling, Marco Pagni
MetaNetX.org: a website and repository for accessing, analysing and manipulating metabolic networks. Bioinform. 29 (6) (2013)
Sébastien Moretti, Riccardo Murri, Sergio Maffioletti, Arnold Kuzniar, Briséïs Castella, Nicolas Salamin, Marc Robinson-Rechavi, Heinz Stockinger
gcodeml: A Grid-enabled Tool for Detecting Positive Selection in Biological Evolution. HealthGrid (2012)
Panu Artimo, Manohar Jonnalagedda, Konstantin Arnold, Delphine Baratin, Gábor Csárdi, Edouard De Castro, Severine Duvaud, Volker Flegel, Arnaud Fortier, Elisabeth Gasteiger, Aurélien Grosdidier, Céline Hernandez, Vassilios Ioannidis, Dmitri Kuznetsov, Robin Liechti, Sébastien Moretti, Khaled Mostaguir, Nicole Redaschi, Grégoire Rossier, Ioannis Xenarios, Heinz Stockinger
ExPASy: SIB bioinformatics resource portal. Nucleic Acids Res. 40 (Web-Server-Issue) (2012)
Sébastien Moretti, Riccardo Murri, Sergio Maffioletti, Arnold Kuzniar, Briséïs Castella, Nicolas Salamin, Marc Robinson-Rechavi, Heinz Stockinger
gcodeml: A Grid-enabled Tool for Detecting Positive Selection in Biological Evolution CoRR (2012)
Paolo Di Tommaso, Sébastien Moretti, Ioannis Xenarios, Miquel Orobitg, Alberto Montanyola, Jia-Ming Chang, Jean-François Taly, Cédric Notredame
T-Coffee: a web server for the multiple sequence alignment of protein and RNA sequences using structural information and homology extension. Nucleic Acids Res. 39 (Web-Server-Issue) (2011)
Adam Kraut, Sébastien Moretti, Marc Robinson-Rechavi, Heinz Stockinger, Dean Flanders
Phylogenetic Code in the Cloud - Can it Meet the Expectations? HealthGrid (2010)
Estelle Proux-Wéra, Romain A. Studer, Sébastien Moretti, Marc Robinson-Rechavi
Selectome: a database of positive selection. Nucleic Acids Res. 37 (Database-Issue) (2009)
Sébastien Moretti, Andreas Wilm, Desmond G. Higgins, Ioannis Xenarios, Cédric Notredame
R-Coffee: a web server for accurately aligning noncoding RNA sequences. Nucleic Acids Res. 36 (Web-Server-Issue) (2008)
Frederic B. Bastian, Gilles Parmentier, Julien Roux, Sébastien Moretti, Vincent Laudet, Marc Robinson-Rechavi
Bgee: Integrating and Comparing Heterogeneous Transcriptome Data Among Species. DILS (2008)
Sébastien Moretti, Fabrice Armougom, Iain M. Wallace, Desmond G. Higgins, C. Victor Jongeneel, Cédric Notredame
The M-Coffee web server: a meta-method for computing multiple sequence alignments by combining alternative alignment methods. Nucleic Acids Res. 35 (Web-Server-Issue) (2007)
Sébastien Moretti, Frédéric Reinier, Olivier Poirot, Fabrice Armougom, Stéphane Audic, Vladimir Keduas, Cédric Notredame
PROTOGENE: turning amino acid alignments into bona fide CDS nucleotide alignments. Nucleic Acids Res. 34 (Web-Server-Issue) (2006)
Fabrice Armougom, Sébastien Moretti, Vladimir Keduas, Cédric Notredame
The iRMSD: a local measure of sequence alignment accuracy using structural information. ISMB (Supplement of Bioinformatics) (2006)
Fabrice Armougom, Olivier Poirot, Sébastien Moretti, Desmond G. Higgins, Phillip Bucher, Vladimir Keduas, Cédric Notredame
APDB: a web server to evaluate the accuracy of sequence alignments using structural information. Bioinform. 22 (19) (2006)
Fabrice Armougom, Sébastien Moretti, Olivier Poirot, Stéphane Audic, Pierre Dumas, Basile Schaeli, Vladimir Keduas, Cédric Notredame
Expresso: automatic incorporation of structural information in multiple sequence alignments using 3D-Coffee. Nucleic Acids Res. 34 (Web-Server-Issue) (2006)