Tarcisio Mendes de Farias

Publication Activity (10 Years)

Years Active: 2015-2024
Publications (10 Years): 23

Top Topics

Essential Proteins

Natural Language

Top Venues

Nucleic Acids Res.

OTM Conferences

Publications

Julio Cesar Rangel Reyes, Tarcisio Mendes de Farias, Ana Claudia Sima, Norio Kobayashi
SPARQL Generation: an analysis on fine-tuning OpenLLaMA for Question Answering over a Life Science Knowledge Graph. CoRR (2024)
Ana Claudia Sima, Tarcisio Mendes de Farias
On the Potential of Artificial Intelligence Chatbots for Data Exploration of Federated Bioinformatics Knowledge Graphs. CoRR (2023)
Petros Liakopoulous, Borbala Banfalvi, Xinyi Wang, Sina Majidian, Tarcisio Mendes de Farias, Christophe Dessimoz, Ana Claudia Sima
Towards predicting essential proteins via federated SPARQL queries. SWAT4HCLS (2023)
Ana Claudia Sima, Tarcisio Mendes de Farias
On the Potential of Artificial Intelligence Chatbots for Data Exploration of Federated Bioinformatics Knowledge Graphs. SeWeBMeDA@ESWC (2023)
Tarcisio Mendes de Farias, Tatsuya Kushida, Ana Claudia Sima, Christophe Dessimoz, Hirokazu Chiba, Frédéric B. Bastian, Hiroshi Masuya
Data in use for Alzheimer disease study: combining gene expression, orthology, bioresource and disease datasets. SWAT4HCLS (2023)
Tarcisio Mendes de Farias, Julien Wollbrett, Marc Robinson-Rechavi, Frederic B. Bastian
Boosting interoperability: towards an increasingly reusable bioinformatics knowledge base. CoRR (2023)
Ana Claudia Sima, Tarcisio Mendes de Farias, Maria Anisimova, Christophe Dessimoz, Marc Robinson-Rechavi, Erich Zbinden, Kurt Stockinger
Bio-SODA UX: enabling natural language question answering over knowledge graphs with user disambiguation. Distributed Parallel Databases 40 (2) (2022)
Tarcisio Mendes de Farias, Christophe Dessimoz, Aarón Ayllón-Benítez, Chen Yang, Jiao Long, Ana Claudia Sima
Federating and querying heterogeneous and distributed Web APIs and triple stores. CoRR (2022)
Shiqi Liang, Kurt Stockinger, Tarcisio Mendes de Farias, Maria Anisimova, Manuel Gil
Querying knowledge graphs in natural language. J. Big Data 8 (1) (2021)
Adrian M. Altenhoff, Clément-Marie Train, Kimberly J. Gilbert, Ishita Mediratta, Tarcisio Mendes de Farias, David Moi, Yannis Nevers, Hale-Seda Radoykova, Victor Rossier, Alex Warwick Vesztrocy, Natasha M. Glover, Christophe Dessimoz
OMA orthology in 2021: website overhaul, conserved isoforms, ancestral gene order and more. Nucleic Acids Res. 49 (Database-Issue) (2021)
Diego Calvanese, Davide Lanti, Tarcisio Mendes de Farias, Alessandro Mosca, Guohui Xiao
. Patterns 2 (10) (2021)
Frederic B. Bastian, Julien Roux, Anne Niknejad, Aurélie Comte, Sara S. Fonseca Costa, Tarcisio Mendes de Farias, Sébastien Moretti, Gilles Parmentier, Valentine Rech de Laval, Marta Rosikiewicz, Julien Wollbrett, Amina Echchiki, Angélique Escoriza, Walid H. Gharib, Mar Gonzales-Porta, Yohan Jarosz, Balazs Laurenczy, Philippe Moret, Emilie Person, Patrick Roelli, Komal Sanjeev, Mathieu Seppey, Marc Robinson-Rechavi
The Bgee suite: integrated curated expression atlas and comparative transcriptomics in animals. Nucleic Acids Res. 49 (Database-Issue) (2021)
Sihem Amer-Yahia, Georgia Koutrika, Martin Braschler, Diego Calvanese, Davide Lanti, Hendrik Lücke-Tieke, Alessandro Mosca, Tarcisio Mendes de Farias, Dimitris Papadopoulos, Yogendra Patil, Guillem Rull, Ellery Smith, Dimitrios Skoutas, Srividya Subramanian, Kurt Stockinger
INODE: Building an End-to-End Data Exploration System in Practice. SIGMOD Rec. 50 (4) (2021)
Ana Claudia Sima, Tarcisio Mendes de Farias, Maria Anisimova, Christophe Dessimoz, Marc Robinson-Rechavi, Erich Zbinden, Kurt Stockinger
Bio-SODA: Enabling Natural Language Question Answering over Knowledge Graphs without Training Data. SSDBM (2021)
Ana Claudia Sima, Tarcisio Mendes de Farias, Maria Anisimova, Christophe Dessimoz, Marc Robinson-Rechavi, Erich Zbinden, Kurt Stockinger
Bio-SODA: Enabling Natural Language Question Answering over Knowledge Graphs without Training Data. CoRR (2021)
Sihem Amer-Yahia, Georgia Koutrika, Frederic Bastian, Theofilos Belmpas, Martin Braschler, Ursin Brunner, Diego Calvanese, Maximilian Fabricius, Orest Gkini, Catherine Kosten, Davide Lanti, Antonis Litke, Hendrik Lücke-Tieke, Francesco Alessandro Massucci, Tarcisio Mendes de Farias, Alessandro Mosca, Francesco Multari, Nikolaos Papadakis, Dimitris Papadopoulos, Yogendra Patil, Aurélien Personnaz, Guillem Rull, Ana Claudia Sima, Ellery Smith, Dimitrios Skoutas, Srividya Subramanian, Guohui Xiao, Kurt Stockinger
INODE: Building an End-to-End Data Exploration System in Practice [Extended Vision]. CoRR (2021)
Tarcisio Mendes de Farias, Christophe Dessimoz
Enhancing interoperable datasets with virtual links. CoRR (2019)
Ana Claudia Sima, Tarcisio Mendes de Farias, Erich Zbinden, Maria Anisimova, Manuel Gil, Heinz Stockinger, Kurt Stockinger, Marc Robinson-Rechavi, Christophe Dessimoz
Enabling semantic queries across federated bioinformatics databases. Database J. Biol. Databases Curation 2019 (2019)
Ana Claudia Sima, Christophe Dessimoz, Kurt Stockinger, Monique Zahn-Zabal, Tarcisio Mendes de Farias
A hands-on introduction to querying evolutionary relationships across multiple data sources using SPARQL. F1000Research 8 (2019)
Tarcisio Mendes de Farias, Kurt Stockinger, Christophe Dessimoz
VoIDext: Vocabulary and Patterns for Enhancing Interoperable Datasets with Virtual Links. OTM Conferences (2019)
Pieter Pauwels, Tarcisio Mendes de Farias, Chi Zhang, Ana Roxin, Jakob Beetz, Jos De Roo, Christophe Nicolle
A performance benchmark over semantic rule checking approaches in construction industry. Adv. Eng. Informatics 33 (2017)
Pieter Pauwels, Tarcisio Mendes de Farias, Chi Zhang, Ana Roxin, Jakob Beetz, Jos De Roo
Querying and reasoning over large scale building data sets: an outline of a performance benchmark. SBD@SIGMOD (2016)
Tarcisio Mendes de Farias, Ana Roxin, Christophe Nicolle
SWRL rule-selection methodology for ontology interoperability. Data Knowl. Eng. 105 (2016)
Tarcisio Mendes de Farias, Ana Roxin, Christophe Nicolle
IfcWoD, Semantically Adapting IFC Model Relations into OWL Properties. CoRR (2015)