Norio Kobayashi

Publication Activity (10 Years)

Years Active: 2001-2024
Publications (10 Years): 23

Top Topics

Linked Open Data

Top Venues

ISWC (Posters & Demos)

Publications

Julio Cesar Rangel Reyes, Tarcisio Mendes de Farias, Ana Claudia Sima, Norio Kobayashi
SPARQL Generation: an analysis on fine-tuning OpenLLaMA for Question Answering over a Life Science Knowledge Graph. CoRR (2024)
Julio Cesar Rangel Reyes, Norio Kobayashi
Developing a semantic event search engine for biomedical events. SWAT4HCLS (2023)
Satoshi Kume, Hiroshi Masuya, Yosky Kataoka, Norio Kobayashi
Development of an Ontology for an Integrated Image Analysis Platform to enable Global Sharing of Microscopy Imaging Data. CoRR (2021)
Satoshi Kume, Hiroshi Masuya, Mitsuyo Maeda, Mitsuo Suga, Yosky Kataoka, Norio Kobayashi
Development of Semantic Web-based Imaging Database for Biological Morphome. CoRR (2021)
Imad Abugessaisa, Jordan A. Ramilowski, Marina Lizio, Jesicca Severin, Akira Hasegawa, Jayson Harshbarger, Atsushi Kondo, Shuhei Noguchi, Chi Wai Yip, Jasmine Li Ching Ooi, Michihira Tagami, Fumi Hori, Saumya Agrawal, Chung-Chau Hon, Mélissa Cardon, Shuya Ikeda, Hiromasa Ono, Hidemasa Bono, Masaki Kato, Kosuke Hashimoto, Alessandro Bonetti, Norio Kobayashi, Jay W. Shin, Michiel J. L. de Hoon, Yoshihide Hayashizaki, Piero Carninci, Hideya Kawaji, Takeya Kasukawa
FANTOM enters 20th year: expansion of transcriptomic atlases and functional annotation of non-coding RNAs. Nucleic Acids Res. 49 (Database-Issue) (2021)
Norio Kobayashi, Josh Moore, Shuichi Onami, Jason R. Swedlow
OME Core Ontology: An OWL-based Life Science Imaging Data Model. SWAT4HCLS (2019)
Josh Moore, Norio Kobayashi, Susanne Kunis, Shuichi Onami, Jason R. Swedlow
On Bringing Bioimaging Data into the Open (World). SWAT4HCLS (2019)
Masahiko Morita, Kazuro Shimokawa, Masaomi Nishimura, Sakiko Nakamura, Yuki Tsujimura, Satoko Takemoto, Takehiro Tawara, Hideo Yokota, Shuhei Wemler, Daisuke Miyamoto, Hidetoshi Ikeno, Akira Sato, Teiichi Furuichi, Norio Kobayashi, Yoshihiro Okumura, Yoko Shiraishi-Yamaguchi, Yuko Okamura-Oho
ViBrism DB: an interactive search and viewer platform for 2D/3D anatomical images of gene expression and co-expression networks. Nucleic Acids Res. 47 (Database-Issue) (2019)
Norio Kobayashi, Yasunori Yamamoto, Atsuko Yamaguchi
UmakaData Extension: Toward Realization of a Practical SPARQL Endpoint Discovery Service for Life Sciences. SWAT4HCLS (2019)
Norio Kobayashi, Satoshi Kume, Kai Lenz, Hiroshi Masuya
RIKEN MetaDatabase: A Database Platform for Health Care and Life Sciences as a Microcosm of Linked Open Data Cloud. Int. J. Semantic Web Inf. Syst. 14 (1) (2018)
Atsuko Yamaguchi, Kouji Kozaki, Yasunori Yamamoto, Hiroshi Masuya, Norio Kobayashi
LOD Surfer API: Web API for LOD Surfing Using Class-Class Relationships in Life Sciences. SWAT4LS (2017)
Satoshi Kume, Hiroshi Masuya, Mitsuyo Maeda, Mitsuo Suga, Yosky Kataoka, Norio Kobayashi
Development of Semantic Web-Based Imaging Database for Biological Morphome. JIST (2017)
Norio Kobayashi, Satoshi Kume, Hiroshi Masuya
Metadata-driven Interdisciplinary Research Projects Using RIKEN MetaDatabase. SWAT4LS (2017)
Atsuko Yamaguchi, Kouji Kozaki, Yasunori Yamamoto, Hiroshi Masuya, Norio Kobayashi
Semantic Graph Analysis for Federated LOD Surfing in Life Sciences. JIST (2017)
Norio Kobayashi, Kai Lenz, Hiroshi Masuya
RIKEN MetaDatabase: A Database Platform as a Microcosm of Linked Open Data Cloud in the Life Sciences. JIST (Workshops & Posters) (2016)
Atsuko Yamaguchi, Kouji Kozaki, Kai Lenz, Yasunori Yamamoto, Hiroshi Masuya, Norio Kobayashi
Semantic Data Acquisition by Traversing Class-Class Relationships Over Linked Open Data. JIST (2016)
Satoshi Kume, Hiroshi Masuya, Yosky Kataoka, Norio Kobayashi
Development of an Ontology for an Integrated Image Analysis Platform to enable Global Sharing of Microscopy Imaging Data. ISWC (Posters & Demos) (2016)
Terue Takatsuki, Mikako Saito, Sadahiro Kumagai, Eiki Takayama, Kazuya Ohshima, Nozomu Ohshiro, Kai Lenz, Nobuhiko Tanaka, Norio Kobayashi, Hiroshi Masuya
A RDF based Portal of Biological Phenotype Data produced in Japan. ISWC (Posters & Demos) (2016)
Atsuko Yamaguchi, Kouji Kozaki, Kai Lenz, Yasunori Yamamoto, Hiroshi Masuya, Norio Kobayashi
SPARQL Builder: Constructing SPARQL Query by Traversing Class-Class Relationships for Life Science Databases. JIST (Workshops & Posters) (2016)
Norio Kobayashi, Kai Lenz, Hiroshi Masuya
RIKEN MetaDatabase: A Database Platform as a Microcosm of Linked Open Data Cloud in the Life Sciences. JIST (2016)
Kai Lenz, Hiroshi Masuya, Norio Kobayashi
RIKEN MetaDatabase: a Database Publication Platform for RIKENs Life-science Researchers that Promotes Research Collaborations over Different Research Area. ISWC (Posters & Demos) (2016)
Atsuko Yamaguchi, Kouji Kozaki, Kai Lenz, Yasunori Yamamoto, Hiroshi Masuya, Norio Kobayashi
Data Acquisition by Traversing Class-Class Relationships over the Linked Open Data. ISWC (Posters & Demos) (2016)
Atsuko Yamaguchi, Yasunori Yamamoto, Kouji Kozaki, Kai Lenz, Hiroshi Masuya, Norio Kobayashi
SPARQL Query Construction with Monitoring Service for Endpoints. SWAT4LS (2016)
Atsuko Yamaguchi, Katsuhiko Okubo, Norio Kobayashi, Kouji Kozaki, Sadahiro Kumagai, Kai Lenz, Tomoe Nobusada, Hongyan Wu, Yasunori Yamamoto, Hideki Hatanaka
RDF-Based Integration with SPARQL Building System for Life Science Database Archive. SWAT4LS (2015)
Hiroshi Masuya, Terue Takatsuki, Mikako Saito, Eiki Takayama, Kazuya Ohshima, Nozomu Ohshiro, Kai Lenz, Nobuhiko Tanaka, Hiroshi Mori, Shuichi Kawashima, Norio Kobayashi
RDF-based Data Sharing of Bio-resource Related Information. SWAT4LS (2015)
Norio Kobayashi, Kai Lenz, Hiroshi Masuya
RIKEN Meta Database: A Life-science Metadata Database Based on the Semantic Web. SWAT4LS (2015)
Atsuko Yamaguchi, Kouji Kozaki, Kai Lenz, Hongyan Wu, Yasunori Yamamoto, Norio Kobayashi
Efficiently Finding Paths Between Classes to Build a SPARQL Query for Life-Science Databases. JIST (2015)
Norio Kobayashi, Kai Lenz, Hongyan Wu, Kouji Kozaki, Atsuko Yamaguchi
Prototype Implementation of SPARQL Builder for Life-science Databases by Intelligent Schema Analysis on RDF datasets. SWAT4LS (2014)
Atsuko Yamaguchi, Kouji Kozaki, Kai Lenz, Hongyan Wu, Norio Kobayashi
An Intelligent SPARQL Query Builder for Exploration of Various Life-science Databases. IESD@ISWC (2014)
Yuko Makita, Norio Kobayashi, Yuko Yoshida, Koji Doi, Yoshiki Mochizuki, Koro Nishikata, Akihiro Matsushima, Satoshi Takahashi, Manabu Ishii, Terue Takatsuki, Rinki Bhatia, Zolzaya Khadbaatar, Hajime Watabe, Hiroshi Masuya, Tetsuro Toyoda
PosMed: ranking genes and bioresources based on Semantic Web Association Study. Nucleic Acids Res. 41 (Webserver-Issue) (2013)
Norio Kobayashi, Yuko Makita, Manabu Ishii, Akihiro Matsushima, Yoshiki Mochizuki, Koji Doi, Koro Nishikata, David Gifford, Terue Takatsuki, Hiroshi Masuya, Tetsuro Toyoda
PosMed: A Biomedical Entity Prioritisation Tool Based on Statistical Inference over Literature and the Semantic Web. SWAT4LS (2013)
Hiroshi Masuya, Terue Takatsuki, Yuko Makita, Yuko Yoshida, Yoshiki Mochizuki, Norio Kobayashi, Atsushi Yoshiki, Yukio Nakamura, Tetsuro Toyoda, Yuichi Obata
Development of Linked Open Data for Bioresources. JIST (2012)
Norio Kobayashi, Tetsuro Toyoda
BioSPARQL: ontology-based smart building of SPARQL queries for biological linked open data. SWAT4LS (2011)
Norio Kobayashi, Manabu Ishii, Satoshi Takahashi, Yoshiki Mochizuki, Akihiro Matsushima, Tetsuro Toyoda
Semantic-JSON: a lightweight web service interface for Semantic Web contents integrating multiple life science databases. Nucleic Acids Res. 39 (Web-Server-Issue) (2011)
Hiroshi Masuya, Yuko Makita, Norio Kobayashi, Koro Nishikata, Yuko Yoshida, Yoshiki Mochizuki, Koji Doi, Terue Takatsuki, Kazunori Waki, Nobuhiko Tanaka, Manabu Ishii, Akihiro Matsushima, Satoshi Takahashi, Atsushi Hijikata, Kouji Kozaki, Teiichi Furuichi, Hideya Kawaji, Shigeharu Wakana, Yukio Nakamura, Atsushi Yoshiki, Takehide Murata, Kaoru Fukami-Kobayashi, S. Sujatha Mohan, Osamu Ohara, Yoshihide Hayashizaki, Riichiro Mizoguchi, Yuichi Obata, Tetsuro Toyoda
The RIKEN integrated database of mammals. Nucleic Acids Res. 39 (Database-Issue) (2011)
Hiroshi Masuya, Georgios V. Gkoutos, Nobuhiko Tanaka, Kazunori Waki, Yoshihiro Okuda, Tatsuya Kushida, Norio Kobayashi, Koji Doi, Kouji Kozaki, Robert Hoehndorf, Shigeharu Wakana, Tetsuro Toyoda, Riichiro Mizoguchi
An Advanced Strategy for Integration of Biological Measurement Data. ICBO (2011)
Akihiro Matsushima, Norio Kobayashi, Yoshiki Mochizuki, Manabu Ishii, Shuji Kawaguchi, Takaho A. Endo, Ryo Umetsu, Yuko Makita, Tetsuro Toyoda
OmicBrowse: a Flash-based high-performance graphics interface for genomic resources. Nucleic Acids Res. 37 (Web-Server-Issue) (2009)
Yuko Yoshida, Yuko Makita, Naohiko Heida, Satomi Asano, Akihiro Matsushima, Manabu Ishii, Yoshiki Mochizuki, Hiroshi Masuya, Shigeharu Wakana, Norio Kobayashi, Tetsuro Toyoda
PosMed (Positional Medline): prioritizing genes with an artificial neural network comprising medical documents to accelerate positional cloning. Nucleic Acids Res. 37 (Web-Server-Issue) (2009)
Norio Kobayashi, Yuko Makita, Eli Kaminuma, Shuji Kawaguchi, Yuko Yoshida, Yoshiki Mochizuki, Akihiro Matsushima, Manabu Ishii, Ryo Umetsu, Satomi Asano, Naohiko Heida, Tetsuya Sakurai, Takashi Kuromori, Kazuo Shinozaki, Tetsuro Toyoda
A Secure Data Repository Integrating Huge Volumes of Digital Contents as a Semantic Web. SWAT4LS (2008)
Norio Kobayashi, Tetsuro Toyoda
Statistical search on the Semantic Web. Bioinform. 24 (7) (2008)
Norio Kobayashi, Tetsuro Toyoda
Penta and Hexa Statements are Suitable for Representing Omics Knowledge on the Semantic Web. SWAT4LS (2008)
Tetsuro Toyoda, Yoshiki Mochizuki, Keith Player, Naohiko Heida, Norio Kobayashi, Yoshiyuki Sakaki
OmicBrowse: a browser of multidimensional omics annotations. Bioinform. 23 (4) (2007)
Norio Kobayashi, Mircea Marin, Yoshimasa Tanaka, Hideko Urushihara
Genome. Inf. Media Technol. 1 (2) (2006)
Norio Kobayashi, Mircea Marin, Tetsuo Ida
Collaborative Constraint Functional Logic Programming in an Open Environment. APLAS (2001)