Shuichi Onami

Publication Activity (10 Years)

Years Active: 2004-2024
Publications (10 Years): 12

Top Topics

Microscope Images

Caenorhabditis Elegans

Markup Language

Top Venues

Publications

Yuki Yamagata, Tatsuya Kushida, Shuichi Onami, Hiroshi Masuya
Homeostasis imbalance process ontology: a study on COVID-19 infectious processes. BMC Medical Informatics Decis. Mak. (4) (2024)
Yusuke Azuma, Hatsumi Okada, Shuichi Onami
Systematic analysis of cell morphodynamics in C. elegans early embryogenesis. Frontiers Bioinform. 3 (2023)
Soya Shinkai, Hiroya Itoga, Koji Kyoda, Shuichi Onami
PHi-C2: interpreting Hi-C data as the dynamic 3D genome state. Bioinform. 38 (21) (2022)
Eisuke Ito, Takaya Ueda, Ryo Takano, Yukako Tohsato, Koji Kyoda, Shuichi Onami, Ikuko Nishikawa
Phenotype Anomaly Detection for Biological Dynamics Data Using a Deep Generative Model. ICANN (2) (2022)
Momoko Imakubo, Jun Takayama, Hatsumi Okada, Shuichi Onami
Statistical image processing quantifies the changes in cytoplasmic texture associated with aging in Caenorhabditis elegans oocytes. BMC Bioinform. 22 (1) (2021)
Norio Kobayashi, Josh Moore, Shuichi Onami, Jason R. Swedlow
OME Core Ontology: An OWL-based Life Science Imaging Data Model. SWAT4HCLS (2019)
Josh Moore, Norio Kobayashi, Susanne Kunis, Shuichi Onami, Jason R. Swedlow
On Bringing Bioimaging Data into the Open (World). SWAT4HCLS (2019)
Yosuke Onoue, Koji Kyoda, Miki Kioka, Kazutaka Baba, Shuichi Onami, Koji Koyamada
Development of an Integrated Visualization System for Phenotypic Character Networks. PacificVis (2018)
Sihai Yang, Xian-Hua Han, Yukako Tohsato, Koji Kyoda, Shuichi Onami, Ikuko Nishikawa, Yen-Wei Chen
. J. Comput. Biol. 24 (5) (2017)
Yusuke Azuma, Shuichi Onami
embryos. BMC Bioinform. 18 (1) (2017)
Xian-Hua Han, Yukako Tohsato, Koji Kyoda, Shuichi Onami, Ikuko Nishikawa, Yen-Wei Chen
Nuclear detection in 4D microscope images of a developing embryo using an enhanced probability map of top-ranked intensity-ordered descriptors. IPSJ Trans. Comput. Vis. Appl. 8 (2016)
Yukako Tohsato, Kenneth H. L. Ho, Koji Kyoda, Shuichi Onami
SSBD: a database of quantitative data of spatiotemporal dynamics of biological phenomena. Bioinform. 32 (22) (2016)
Koji Kyoda, Yukako Tohsato, Kenneth H. L. Ho, Shuichi Onami
Biological Dynamics Markup Language (BDML): an open format for representing quantitative biological dynamics data. Bioinform. 31 (7) (2015)
Xian-Hua Han, Yukako Tohsato, Koji Kyoda, Shuichi Onami, Ikuko Nishikawa, Yen-Wei Chen
Nuclear detection in 4D microscope images using enhanced probability map of top-ranked intensity-ordered descriptors. ACPR (2015)
Yusuke Azuma, Shuichi Onami
Evaluation of the effectiveness of simple nuclei-segmentation methods on Caenorhabditis elegans embryogenesis images. BMC Bioinform. 14 (2013)
Koji Kyoda, Eru Adachi, Eriko Masuda, Yoko Nagai, Yoko Suzuki, Taeko Oguro, Mitsuru Urai, Ryoko Arai, Mari Furukawa, Kumiko Shimada, Junko Kuramochi, Eriko Nagai, Shuichi Onami
WDDD: Worm Developmental Dynamics Database. Nucleic Acids Res. 41 (Database-Issue) (2013)
Koji Kyoda, Kotaro Baba, Hiroaki Kitano, Shuichi Onami
A proof of the DBRF-MEGN method, an algorithm for deducing minimum equivalent gene networks. Source Code Biol. Medicine 6 (2011)
Shugo Hamahashi, Hiroaki Kitano, Shuichi Onami
embryos by using image processing and object tracking. Systems and Computers in Japan 38 (11) (2007)
Shugo Hamahashi, Shuichi Onami, Hiroaki Kitano
Detection of nuclei in 4D Nomarski DIC microscope images of early Caenorhabditis elegans embryos using local image entropy and object tracking. BMC Bioinform. 6 (2005)
Koji Kyoda, Kotaro Baba, Shuichi Onami, Hiroaki Kitano
DBRF-MEGN method: an algorithm for deducing minimum equivalent gene networks from large-scale gene expression profiles of gene deletion mutants. Bioinform. 20 (16) (2004)