Ursula Pieper

Publication Activity (10 Years)

Years Active: 2000-2015
Publications (10 Years): 0

Top Topics

Multiple Sequence Alignments

Protein Structure

Top Venues

PLoS Comput. Biol.

Nucleic Acids Res.

Publications

Jeffrey R. Johnson, Silvia D. Santos, Tasha Johnson, Ursula Pieper, Marta Strumillo, Omar Wagih, Andrej Sali, Nevan J. Krogan, Pedro Beltrão
Oocytes. PLoS Comput. Biol. 11 (8) (2015)
Ursula Pieper, Benjamin M. Webb, Guang Qiang Dong, Dina Schneidman-Duhovny, Hao Fan, Seung Joong Kim, Natalia Khuri, Yannick G. Spill, Patrick Weinkam, Michal Hammel, John A. Tainer, Michael Nilges, Andrej Sali
ModBase, a database of annotated comparative protein structure models and associated resources. Nucleic Acids Res. 42 (Database-Issue) (2014)
Francisco Martínez-Jiménez, George Papadatos, Lun Yang, Iain M. Wallace, Vinod Kumar, Ursula Pieper, Andrej Sali, James R. Brown, John P. Overington, Marc A. Martí-Renom
. PLoS Comput. Biol. 9 (10) (2013)
Hannes Braberg, Benjamin M. Webb, Elina Tjioe, Ursula Pieper, Andrej Sali, Mallur S. Madhusudhan
SALIGN: a web server for alignment of multiple protein sequences and structures. Bioinform. 28 (15) (2012)
Ursula Pieper, Benjamin M. Webb, David T. Barkan, Dina Schneidman-Duhovny, Avner Schlessinger, Hannes Braberg, Zheng Yang, Elaine C. Meng, Eric F. Pettersen, Conrad C. Huang, Ruchira S. Datta, Parthasarathy Sampathkumar, Mallur S. Madhusudhan, Kimmen Sjölander, Thomas E. Ferrin, Stephen K. Burley, Andrej Sali
ModBase, a database of annotated comparative protein structure models, and associated resources. Nucleic Acids Res. 39 (Database-Issue) (2011)
David T. Barkan, Daniel R. Hostetter, Sami Mahrus, Ursula Pieper, James A. Wells, Charles S. Craik, Andrej Sali
Prediction of protease substrates using sequence and structure features. Bioinform. 26 (14) (2010)
Ursula Pieper, Narayanan Eswar, Ben M. Webb, David Eramian, Libusha Kelly, David T. Barkan, Hannah Carter, Parminder Mankoo, Rachel Karchin, Marc A. Martí-Renom, Fred P. Davis, Andrej Sali
MODBASE, a database of annotated comparative protein structure models and associated resources. Nucleic Acids Res. 37 (Database-Issue) (2009)
Marc A. Martí-Renom, Andrea Rossi, Fátima Al-Shahrour, Fred P. Davis, Ursula Pieper, Joaquín Dopazo, Andrej Sali
The AnnoLite and AnnoLyze programs for comparative annotation of protein structures. BMC Bioinform. 8 (S-4) (2007)
Marc A. Martí-Renom, Ursula Pieper, Mallur S. Madhusudhan, Andrea Rossi, Narayanan Eswar, Fred P. Davis, Fátima Al-Shahrour, Joaquín Dopazo, Andrej Sali
DBAli tools: mining the protein structure space. Nucleic Acids Res. 35 (Web-Server-Issue) (2007)
Ursula Pieper, Narayanan Eswar, Fred P. Davis, Hannes Braberg, Mallur S. Madhusudhan, Andrea Rossi, Marc A. Martí-Renom, Rachel Karchin, Ben M. Webb, David Eramian, Min-Yi Shen, Libusha Kelly, Francisco Melo, Andrej Sali
MODBASE: a database of annotated comparative protein structure models and associated resources. Nucleic Acids Res. 34 (Database-Issue) (2006)
Rachel Karchin, Mark Diekhans, Libusha Kelly, Daryl J. Thomas, Ursula Pieper, Narayanan Eswar, David Haussler, Andrej Sali
LS-SNP: large-scale annotation of coding non-synonymous SNPs based on multiple information sources. Bioinform. 21 (12) (2005)
Ursula Pieper, Narayanan Eswar, Hannes Braberg, Mallur S. Madhusudhan, Fred P. Davis, Ashley C. Stuart, Nebojsa Mirkovic, Andrea Rossi, Marc A. Martí-Renom, András Fiser, Ben M. Webb, Daniel M. Greenblatt, Conrad C. Huang, Thomas E. Ferrin, Andrej Sali
MODBASE, a database of annotated comparative protein structure models, and associated resources. Nucleic Acids Res. 32 (Database-Issue) (2004)
Narayanan Eswar, Bino John, Nebojsa Mirkovic, András Fiser, Valentin A. Ilyin, Ursula Pieper, Ashley C. Stuart, Marc A. Martí-Renom, Mallur S. Madhusudhan, Bozidar Yerkovich, Andrej Sali
Tools for comparative protein structure modeling and analysis. Nucleic Acids Res. 31 (13) (2003)
Valentin A. Ilyin, Ursula Pieper, Ashley C. Stuart, Marc A. Martí-Renom, Linda McMahan, Andrej Sali
ModView, visualization of multiple protein sequences and structures. Bioinform. 19 (1) (2003)
Ursula Pieper, Narayanan Eswar, Ashley C. Stuart, Valentin A. Ilyin, Andrej Sali
MODBASE, a database of annotated comparative protein structure models. Nucleic Acids Res. 30 (1) (2002)
Roberto Sánchez, Ursula Pieper, Nebojsa Mirkovic, Paul I. W. de Bakker, Edward Wittenstein, Andrej Sali
MODBASE, a database of annotated comparative protein structure models. Nucleic Acids Res. 28 (1) (2000)