Haim J. Wolfson

Publication Activity (10 Years)

Years Active: 1988-2023
Publications (10 Years): 7

Top Topics

Geometric Hashing

Extended Abstract

Expectation Maximisation

Top Venues

PLoS Comput. Biol.

Publications

Jérôme Tubiana, Lucia Adriana-Lifshits, Michael Nissan, Matan Gabay, Inbal Sher, Marina Sova, Haim J. Wolfson, Maayan Gal
Funneling modulatory peptide design with generative models: Discovery and characterization of disruptors of calcineurin protein-protein interactions. PLoS Comput. Biol. 19 (2) (2023)
Mark Rozanov, Haim J. Wolfson
SegmA: Residue Segmentation of cryo-EM density maps. BIBM (2023)
Mark Rozanov, Haim J. Wolfson
AAnchor: CNN guided detection of anchor amino acids in high resolution cryo-EM density maps. BIBM (2018)
Michael Estrin, Haim J. Wolfson
SnapDock - template-based docking by Geometric Hashing. Bioinform. 33 (14) (2017)
Michael Zabejansky, Haim J. Wolfson
Accelerating protein-protein complex validation by GPU based funnel generation. BIBM (2016)
Naama Hurwitz, Dina Schneidman-Duhovny, Haim J. Wolfson
Memdock: an α-helical membrane protein docking algorithm. Bioinform. 32 (16) (2016)
Daniel Zaidman, Haim J. Wolfson
PinaColada: peptide-inhibitor ant colony ad-hoc design algorithm. Bioinform. 32 (15) (2016)
Naama Amir, Dan Cohen, Haim J. Wolfson
DockStar: a novel ILP-based integrative method for structural modeling of multimolecular protein complexes. Bioinform. 31 (17) (2015)
Naama Amir, Dan Cohen, Haim J. Wolfson
DockStar: A Novel ILP Based Integrative Method for Structural Modelling of Multimolecular Protein Complexes (Extended Abstract). RECOMB (2015)
Elad Donsky, Haim J. Wolfson
PepCrawler: a fast RRT-based algorithm for high-resolution refinement and binding affinity estimation of peptide inhibitors. Bioinform. 27 (20) (2011)
Ilona Kifer, Ruth Nussinov, Haim J. Wolfson
GOSSIP: a method for fast and accurate global alignment of protein structures. Bioinform. 27 (7) (2011)
Elad Donsky, Haim J. Wolfson
PepCrawler: A Fast RRT-Like Algorithm for High-Resolution Refinement and Binding-Affinity Estimation of Peptide Inhibitors - (Abstract). WABI (2011)
Elina Tjioe, Keren Lasker, Ben M. Webb, Haim J. Wolfson, Andrej Sali
MultiFit: a web server for fitting multiple protein structures into their electron microscopy density map. Nucleic Acids Res. 39 (Web-Server-Issue) (2011)
Mira Abraham, Haim J. Wolfson
Inexact Graph Matching by "Geodesic Hashing" for the Alignment of Pseudoknoted RNA Secondary Structures. Stringology (2011)
Efrat Mashiach, Ruth Nussinov, Haim J. Wolfson
FiberDock: a web server for flexible induced-fit backbone refinement in molecular docking. Nucleic Acids Res. 38 (Web-Server-Issue) (2010)
Alexandra Shulman-Peleg, Ruth Nussinov, Haim J. Wolfson
RsiteDB: a database of protein binding pockets that interact with RNA nucleotide bases. Nucleic Acids Res. 37 (Database-Issue) (2009)
Oranit Dror, Dina Schneidman-Duhovny, Yuval Inbar, Ruth Nussinov, Haim J. Wolfson
Novel Approach for Efficient Pharmacophore-Based Virtual Screening: Method and Applications. J. Chem. Inf. Model. 49 (10) (2009)
Dina Schneidman-Duhovny, Oranit Dror, Yuval Inbar, Ruth Nussinov, Haim J. Wolfson
Deterministic Pharmacophore Detection via Multiple Flexible Alignment of Drug-Like Molecules. J. Comput. Biol. 15 (7) (2008)
Alexandra Shulman-Peleg, Maxim Shatsky, Ruth Nussinov, Haim J. Wolfson
MultiBind and MAPPIS: webservers for multiple alignment of protein 3D-binding sites and their interactions. Nucleic Acids Res. 36 (Web-Server-Issue) (2008)
Dina Schneidman-Duhovny, Oranit Dror, Yuval Inbar, Ruth Nussinov, Haim J. Wolfson
PharmaGist: a webserver for ligand-based pharmacophore detection. Nucleic Acids Res. 36 (Web-Server-Issue) (2008)
Efrat Mashiach, Dina Schneidman-Duhovny, Nelly Andrusier, Ruth Nussinov, Haim J. Wolfson
FireDock: a web server for fast interaction refinement in molecular docking. Nucleic Acids Res. 36 (Web-Server-Issue) (2008)
Oranit Dror, Dina Schneidman-Duhovny, Alexandra Shulman-Peleg, Ruth Nussinov, Haim J. Wolfson, Roded Sharan
Structural similarity of genetically interacting proteins. BMC Syst. Biol. 2 (2008)
Eitan Yaffe, Dan Fishelovitch, Haim J. Wolfson, Dan Halperin, Ruth Nussinov
MolAxis: a server for identification of channels in macromolecules. Nucleic Acids Res. 36 (Web-Server-Issue) (2008)
Yuval Inbar, Dina Schneidman-Duhovny, Oranit Dror, Ruth Nussinov, Haim J. Wolfson
Deterministic Pharmacophore Detection Via Multiple Flexible Alignment of Drug-Like Molecules. RECOMB (2007)
Keren Lasker, Oranit Dror, Maxim Shatsky, Ruth Nussinov, Haim J. Wolfson
EMatch: Discovery of High Resolution Structural Homologues of Protein Domains in Intermediate Resolution Cryo-EM Maps. IEEE ACM Trans. Comput. Biol. Bioinform. 4 (1) (2007)
Oranit Dror, Ruth Nussinov, Haim J. Wolfson
The ARTS web server for aligning RNA tertiary structures. Nucleic Acids Res. 34 (Web-Server-Issue) (2006)
Maxim Shatsky, Alexandra Shulman-Peleg, Ruth Nussinov, Haim J. Wolfson
The Multiple Common Point Set Problem and Its Application to Molecule Binding Pattern Detection. J. Comput. Biol. 13 (2) (2006)
Gilad Wainreb, Nurit Haspel, Haim J. Wolfson, Ruth Nussinov
A permissive secondary structure-guided superposition tool for clustering of protein fragments toward protein structure prediction via fragment assembly. Bioinform. 22 (11) (2006)
Alexandra Shulman-Peleg, Ruth Nussinov, Haim J. Wolfson
SiteEngines: recognition and comparison of binding sites and protein-protein interfaces. Nucleic Acids Res. 33 (Web-Server-Issue) (2005)
Oranit Dror, Ruth Nussinov, Haim J. Wolfson
ARTS: alignment of RNA tertiary structures. ECCB/JBI (2005)
Keren Lasker, Oranit Dror, Ruth Nussinov, Haim J. Wolfson
Discovery of Protein Substructures in EM Maps. WABI (2005)
Yuval Inbar, Haim J. Wolfson, Ruth Nussinov
Multiple Docking for Protein Structure Prediction. Int. J. Robotics Res. 24 (2-3) (2005)
Alexandra Shulman-Peleg, Maxim Shatsky, Ruth Nussinov, Haim J. Wolfson
MAPPIS: Multiple 3D Alignment of Protein-Protein Interfaces. CompLife (2005)
Dina Schneidman-Duhovny, Yuval Inbar, Ruth Nussinov, Haim J. Wolfson
PatchDock and SymmDock: servers for rigid and symmetric docking. Nucleic Acids Res. 33 (Web-Server-Issue) (2005)
Maxim Shatsky, Alexandra Shulman-Peleg, Ruth Nussinov, Haim J. Wolfson
Recognition of Binding Patterns Common to a Set of Protein Structures. RECOMB (2005)
Maxim Shatsky, Ruth Nussinov, Haim J. Wolfson
FlexProt: Alignment of Flexible Protein Structures Without a Predefinition of Hinge Regions. J. Comput. Biol. 11 (1) (2004)
Alexandra Shulman-Peleg, Shira Mintz, Ruth Nussinov, Haim J. Wolfson
Protein-Protein Interfaces: Recognition of Similar Spatial and Chemical Organizations. WABI (2004)
Maxim Shatsky, Oranit Dror, Dina Schneidman-Duhovny, Ruth Nussinov, Haim J. Wolfson
BioInfo3D: a suite of tools for structural bioinformatics. Nucleic Acids Res. 32 (Web-Server-Issue) (2004)
Oranit Dror, Hadar Benyamini, Ruth Nussinov, Haim J. Wolfson
MASS: multiple structural alignment by secondary structures. ISMB (Supplement of Bioinformatics) (2003)
Yuval Inbar, Hadar Benyamini, Ruth Nussinov, Haim J. Wolfson
Protein structure prediction via combinatorial assembly of sub-structural units. ISMB (Supplement of Bioinformatics) (2003)
Haim J. Wolfson
Spatial Pattern Detection in Structural Bioinformatics. Mathematical Methods for Protein Structure Analysis and Design (2003)
Dina Duhovny, Ruth Nussinov, Haim J. Wolfson
Efficient Unbound Docking of Rigid Molecules. WABI (2002)
Maxim Shatsky, Ruth Nussinov, Haim J. Wolfson
MultiProt - A Multiple Protein Structural Alignment Algorithm. WABI (2002)
Sandeep Kumar, Haim J. Wolfson, Ruth Nussinov
Protein flexibility and electrostatic interactions. IBM J. Res. Dev. 45 (3) (2001)
Nathaniel Leibowitz, Ruth Nussinov, Haim J. Wolfson
MUSTA - A General, Efficient, Automated Method for Multiple Structure Alignment and Detection of Common Motifs: Application to Proteins. J. Comput. Biol. 8 (2) (2001)
Chung-Jung Tsai, Buyong Ma, Yuk Yin Sham, Sandeep Kumar, Haim J. Wolfson, Ruth Nussinov
A hierarchical, building-block-based computational scheme for protein structure prediction. IBM J. Res. Dev. 45 (3) (2001)
Maxim Shatsky, Zipora Y. Fligelman, Ruth Nussinov, Haim J. Wolfson
Alignment of Flexible Protein Structures. ISMB (2000)
Nathaniel Leibowitz, Zipora Y. Fligelman, Ruth Nussinov, Haim J. Wolfson
Multiple Structural Alignment and Core Detection by Geometric Hashing. ISMB (1999)
Bilha Sandak, Ruth Nussinov, Haim J. Wolfson
A Method for Biomolecular Structural Recognition and Docking Allowing Conformational Flexibility. J. Comput. Biol. 5 (4) (1998)
Ruth Nussinov, Raquel Norel, Bilha Sandak, George Verbitsky, Haim J. Wolfson
[Invited Lecture] Structural motifs in the interior and on the surfaces of protein monomers and at protein-protein interfaces. German Conference on Bioinformatics (1998)
Bilha Sandak, Ruth Nussinov, Haim J. Wolfson
Docking of Conformationally Flexible Proteins. CPM (1996)
Konstantin Y. Kupeev, Haim J. Wolfson
A new method of estimating shape similarity. Pattern Recognit. Lett. 17 (8) (1996)
Daniel Reisfeld, Haim J. Wolfson, Yehezkel Yeshurun
Context-free attentional operators: The generalized symmetry transform. Int. J. Comput. Vis. 14 (2) (1995)
Bilha Sandak, Ruth Nussinov, Haim J. Wolfson
An automated computer vision and robotics-based technique for 3-D flexible biomolecular docking and matching. Comput. Appl. Biosci. 11 (1) (1995)
Efi Cohen, Haim J. Wolfson
Partial matching of 3-D objects in CAD/CAM systems. ICPR (1) (1994)
Konstantin Y. Kupeev, Haim J. Wolfson
On shape similarity. ICPR (1) (1994)
Daniel Fischer, Shuo L. Lin, Ruth Nussinov, Haim J. Wolfson
Docking of protein molecules. ICPR (2) (1994)
Daniel Fischer, Raquel Norel, Ruth Nussinov, Haim J. Wolfson
3-D Docking of Protein Molecules. CPM (1993)
Daniel Fischer, Ruth Nussinov, Haim J. Wolfson
3-D Substructure Matching in Protein Molecules. CPM (1992)
Haim J. Wolfson
Generalizing the generalized hough transform. Pattern Recognit. Lett. 12 (8) (1991)
Avinoam Beinglass, Haim J. Wolfson
Articulated object recognition, or: how to generalize the generalized Hough transform. CVPR (1991)
Yehezkel Lamdan, Haim J. Wolfson
On the error analysis of 'geometric hashing'. CVPR (1991)
Eyal Kishon, Trevor Hastie, Haim J. Wolfson
3-D curve matching using splines. J. Field Robotics 8 (6) (1991)
Haim J. Wolfson
Model-Based Object Recognition by Geometric Hashing. ECCV (1990)
Daniel Reisfeld, Haim J. Wolfson, Yehezkel Yeshurun
Detection of interest points using symmetry. ICCV (1990)
Haim J. Wolfson
On curve matching. IEEE Trans. Pattern Anal. Mach. Intell. 12 (5) (1990)
Eyal Kishon, Trevor Hastie, Haim J. Wolfson
3-D Curve Matching Using Splines. ECCV (1990)
Yehezkel Lamdan, Jacob T. Schwartz, Haim J. Wolfson
Affine invariant model-based object recognition. IEEE Trans. Robotics Autom. 6 (5) (1990)
Grigore C. Burdea, Haim J. Wolfson
Solving jigsaw puzzles by a robot. IEEE Trans. Robotics Autom. 5 (6) (1989)
Jiawei Hong, Haim J. Wolfson
An improved model-based matching method using footprints. ICPR (1988)
Yehezkel Lamdan, Jacob T. Schwartz, Haim J. Wolfson
Object recognition by affine invariant matching. CVPR (1988)
Yehezkel Lamdan, Jacob T. Schwartz, Haim J. Wolfson
On recognition of 3-D objects from 2-D images. ICRA (1988)
Yehezkel Lamdan, Haim J. Wolfson
Geometric Hashing: A General And Efficient Model-based Recognition Scheme. ICCV (1988)