Nurit Haspel

Publication Activity (10 Years)

Years Active: 2006-2024
Publications (10 Years): 19

Top Topics

Gene Expression

Machine Learning

Selected Papers

Amino Acid Sequences

Top Venues

J. Comput. Biol.

J. Bioinform. Comput. Biol.

Publications

Nurit Haspel, Hyunbum Jang, Ruth Nussinov
Allosteric Activation of RhoA Complexed with p115-RhoGEF Deciphered by Conformational Dynamics. J. Chem. Inf. Model. 64 (3) (2024)
Muneeba Jilani, Nurit Haspel
Elucidating Cancer Subtypes by Using Epigenome and Genome Cross-Talk. IWBBIO (1) (2024)
Muneeba Jilani, Nurit Haspel
Investigating the Role of Gene Body Methylation and CpG Methylation in Cancer Subtyping. ICBRA (2023)
Muneeba Jilani, Alistair Turcan, Nurit Haspel, Filip Jagodzinski
Assessing the Effects of Amino Acid Insertion and Deletion Mutations. BIBM (2021)
Amir Vajdi, Kourosh Zarringhalam, Nurit Haspel
Patch-DCA: improved protein interface prediction by utilizing structural information and clustering DCA scores. Bioinform. 36 (5) (2020)
Amir Vajdi, Mohammad Reza Zaghian, Saman Farahmand, Elham Rastegar, Kian Maroofi, Shaohua Jia, Marc Pomplun, Nurit Haspel, Akram Bayat
Human Gait Database for Normal Walk Collected by Smart Phone Accelerometer. CoRR (2019)
Amir Vajdi, Arpita Joshi, Nurit Haspel
Integrating Co-Evolutionary Information in Monte Carlo Based Method for Proteins Trajectory Simulation. BCB (2019)
Hamidreza Mohebbi, Amir Vajdi, Nurit Haspel, Dan A. Simovici
Detecting chromosomal structural variation using jaccard distance and parallel architecture. BIBM (2017)
Nurit Haspel, Thomas R. Ioerger, Hisham Al-Mubaid
Introduction to selected papers from the 8th International Conference on Bioinformatics and Computational Biology (BICOB 2016). J. Bioinform. Comput. Biol. 15 (3) (2017)
Nurit Haspel, Amarda Shehu, Kevin Molloy
The 2017 Computational Structural Bioinformatics Workshop: CSBW 2017. BCB (2017)
Roshanak Farhoodi, Max Shelbourne, Rebecca Hsieh, Nurit Haspel, Brian Hutchinson, Filip Jagodzinski
Predicting the Effect of Point Mutations on Protein Structural Stability. BCB (2017)
Nurit Haspel, Dong Luo, Eduardo Gonzalez
Detecting intermediate protein conformations using algebraic topology. BMC Bioinform. 18 (15) (2017)
Roshanak Farhoodi, Bahar Akbal-Delibas, Nurit Haspel
Ranking Protein-Protein Binding Using Evolutionary Information and Machine Learning. BCB (2017)
Jing He, Nurit Haspel, Brian Chen
Preface: Selected Articles from 2015 Computational Structural Bioinformatics Workshop. J. Comput. Biol. 24 (1) (2017)
Roshanak Farhoodi, Bahar Akbal-Delibas, Nurit Haspel
Machine Learning Approaches for Predicting Protein Complex Similarity. J. Comput. Biol. 24 (1) (2017)
Nurit Haspel, Dong Luo, Eduardo Gonzalez
Detecting intermediate protein conformations using algebraic topology. ICCABS (2016)
Bahar Akbal-Delibas, Roshanak Farhoodi, Marc Pomplun, Nurit Haspel
Accurate refinement of docked protein complexes using evolutionary information and deep learning. J. Bioinform. Comput. Biol. 14 (3) (2016)
Erik Andersson, Rebecca Hsieh, Howard Szeto, Roshanak Farhoodi, Nurit Haspel, Filip Jagodzinski
Assessing how multiple mutations affect protein stability using rigid cluster size distributions. ICCABS (2016)
Fahad Saeed, Nurit Haspel, Hisham Al-Mubaid
Introduction to the selected papers from the 7th International Conference on Bioinformatics and Computational Biology (BICoB 2015). J. Bioinform. Comput. Biol. 14 (3) (2016)
Amir Vajdi, Nurit Haspel, Hadi Banaee
A new DP algorithm for comparing gene expression data using geometric similarity. BIBM (2015)
Roshanak Farhoodi, Bahar Akbal-Delibas, Nurit Haspel
Accurate prediction of docked protein structure similarity using neural networks and restricted Boltzmann machines. BIBM (2015)
Amir Vajdi, Nurit Haspel, Hadi Banaee
A new DP algorithm for comparing gene expression data using geometric similarity. BIBM (2015)
Jing He, Amarda Shehu, Nurit Haspel, Brian Chen
The 7th Computational Structural Bioinformatics Workshop. J. Comput. Biol. 22 (9) (2015)
Bahar Akbal-Delibas, Marc Pomplun, Nurit Haspel
Accurate Prediction of Docked Protein Structure Similarity. J. Comput. Biol. 22 (9) (2015)
Rosanne Vetro, Roshanak Farhoodi, Rohith Kotla, Nurit Haspel, David Weisman, Jennifer Rosen, Dan A. Simovici
TIDE: Inter-chromosomal translocation and insertion detection using embeddings. IEEE BigData (2014)
Bahar Akbal-Delibas, Marc Pomplun, Nurit Haspel
AccuRMSD: a machine learning approach to predicting structure similarity of docked protein complexes. BCB (2014)
Filip Jagodzinski, Bahar Akbal-Delibas, Nurit Haspel
An Evolutionary Conservation & Rigidity Analysis Machine Learning Approach for Detecting Critical Protein Residues. BCB (2013)
Dong Luo, Nurit Haspel
Multi-Resolution Rigidity-Based Sampling of Protein Conformational Paths. BCB (2013)
Irina Hashmi, Bahar Akbal-Delibas, Nurit Haspel, Amarda Shehu
Guiding protein docking with Geometric and Evolutionary Information. J. Bioinform. Comput. Biol. 10 (3) (2012)
Bahar Akbal-Delibas, Nurit Haspel
An evolutionary-guided iterative refinement approach for protein multimers. BIBM Workshops (2012)
Bahar Akbal-Delibas, Irina Hashmi, Amarda Shehu, Nurit Haspel
An Evolutionary conservation-Based Method for Refining and Reranking protein Complex Structures. J. Bioinform. Comput. Biol. 10 (3) (2012)
Bahar Akbal-Delibas, Filip Jagodzinski, Nurit Haspel
Combining conservation and rigidity methods to detect critical residues in proteins. BIBM Workshops (2012)
Bahar Akbal-Delibas, Filip Jagodzinski, Nurit Haspel
Towards a hybrid method for detecting critical protein residues. BIBM Workshops (2012)
Rosanne Vetro, Nurit Haspel, Dan A. Simovici
Characterizing Intermediate Conformations in Protein Conformational Space. CIBB (2012)
Bahar Akbal-Delibas, Nurit Haspel
Refining multimeric protein complexes using conservation, electrostatics and probabilistic selection. BIBM Workshops (2012)
Irina Hashmi, Bahar Akbal-Delibas, Nurit Haspel, Amarda Shehu
Protein docking with information on evolutionary conserved interfaces. BIBM Workshops (2011)
Nurit Haspel, Amarda Shehu
The 5th International Conference on Bio-Inspired Models of Network, Information and Computing Systems (Bionetics 2010) Special Track on Bioinformatics. J. Bioinform. Comput. Biol. 9 (3) (2011)
Bahar Akbal-Delibas, Irina Hashmi, Amarda Shehu, Nurit Haspel
Refinement of docked protein complex structures using evolutionary traces. BIBM Workshops (2011)
Nurit Haspel
Tracing Conformational Changes in Proteins Represented at a Coarse Level. BIONETICS (2010)
David Zanuy, Gema Ballano, Ana I. Jiménez, Jordi Casanovas, Nurit Haspel, Carlos Cativiela, David Curcó, Ruth Nussinov, Carlos Alemán
Protein Segments with Conformationally Restricted Amino Acids Can Control Supramolecular Organization at the Nanoscale. J. Chem. Inf. Model. 49 (7) (2009)
Gilad Wainreb, Nurit Haspel, Haim J. Wolfson, Ruth Nussinov
A permissive secondary structure-guided superposition tool for clustering of protein fragments toward protein structure prediction via fragment assembly. Bioinform. 22 (11) (2006)