Fahad Saeed

Publication Activity (10 Years)

Years Active: 2008-2024
Publications (10 Years): 56

Top Topics

Mass Spectrometry

Parallel Algorithm

Top Venues

IPDPS Workshops

Publications

Umair Mohammad, Fahad Saeed
Robustness of ML-Based Seizure Prediction Using Noisy EEG Data From Limited Channels. DCOSS-IoT (2024)
Mohammad Al Olaimat, Jared Martinez, Fahad Saeed, Serdar Bozdag
PPAD: a deep learning architecture to predict progression of Alzheimer's disease. Bioinform. 39 (Supplement-1) (2023)
Oswaldo Artiles, Zeina Al Masry, Fahad Saeed
Confounding Effects on the Performance of Machine Learning Analysis of Static Functional Connectivity Computed from rs-fMRI Multi-site Data. Neuroinformatics 21 (4) (2023)
Fahad Almuqhim, Fahad Saeed
ASD-GResTM: Deep Learning Framework for ASD classification using Gramian Angular Field. BIBM (2023)
Robert Loredo, Fahad Saeed
Q-CASA Invited Speakers Quantum-Centric Supercomputing Strategies for Neuroscience problems: Challenges and Progress. IPDPS Workshops (2023)
Umair Mohammad, Fahad Saeed
Energy Efficient AI/ML based Continuous Monitoring at the Edge: ECG and EEG Case Study. BIBM (2023)
Umair Mohammad, Fahad Saeed
SPERTL: Epileptic Seizure Prediction using EEG with ResNets and Transfer Learning. BHI (2022)
Tianren Yang, Mai A. Al-Duailij, Serdar Bozdag, Fahad Saeed
Classification of Autism Spectrum Disorder Using rs-fMRI data and Graph Convolutional Networks. Big Data (2022)
Fahad Saeed, Muhammad Haseeb, S. S. Iyengar
Communication lower-bounds for distributed-memory computations for mass spectrometry based omics data. J. Parallel Distributed Comput. 161 (2022)
Mohammed Aledhari, Rehma Razzak, Basheer Qolomany, Ala I. Al-Fuqaha, Fahad Saeed
Biomedical IoT: Enabling Technologies, Architectural Elements, Challenges, and Future Directions. IEEE Access 10 (2022)
Fahad Saeed, Amjad Mehmood, Muhammad Faran Majeed, Carsten Maple, Khalid Saeed, Muhammad Kashif Khattak, Huihui Wang, Gregory Epiphaniou
Smart delivery and retrieval of swab collection kit for COVID-19 test using autonomous Unmanned Aerial Vehicles. Phys. Commun. 48 (2021)
Oswaldo Artiles, Fahad Saeed
TurboBC: A Memory Efficient and Scalable GPU Based Betweenness Centrality Algorithm in the Language of Linear Algebra. ICPP Workshops (2021)
Sumesh Kumar, Fahad Saeed
Communication-avoiding micro-architecture to compute Xcorr scores for peptide identification. CoRR (2021)
Mohammed Aledhari, Marianne Di Pierro, Mohamed Hefeida, Fahad Saeed
A Deep Learning-Based Data Minimization Algorithm for Fast and Secure Transfer of Big Genomic Datasets. IEEE Trans. Big Data 7 (2) (2021)
Oswaldo Artiles, Fahad Saeed
TurboBFS: GPU Based Breadth-First Search (BFS) Algorithms in the Language of Linear Algebra. IPDPS Workshops (2021)
Sumesh Kumar, Fahad Saeed
Real-time peptide identification from high-throughput mass-spectrometry data. BCB (2021)
Muhammad Usman Tariq, Muhammad Haseeb, Mohammed Aledhari, Rehma Razzak, Reza M. Parizi, Fahad Saeed
Methods for Proteogenomics Data Analysis, Challenges, and Scalability Bottlenecks: A Survey. IEEE Access 9 (2021)
Khandaker Mamun Ahmed, Taban Eslami, Fahad Saeed, M. Hadi Amini
DeepCOVIDNet: Deep Convolutional Neural Network for COVID-19 Detection from Chest Radiographic Images. BIBM (2021)
Sumesh Kumar, Fahad Saeed
Communication-avoiding micro-architecture to compute Xcorr scores for peptide identification. FPL (2021)
Muhammad Haseeb, Fahad Saeed
HiCOPS: High Performance Computing Framework for Tera-Scale Database Search of Mass Spectrometry based Omics Data. CoRR (2021)
Umair Mohammad, Fahad Saeed
Simulation Testbed for Evaluating Distributed Querying and Searching of Mass Spectrometry Big Data in a Network-based Infrastructure. BigDataService (2021)
Muhammad Haseeb, Fahad Saeed
High performance computing framework for tera-scale database search of mass spectrometry data. Nat. Comput. Sci. 1 (8) (2021)
Muaaz Gul Awan, Abdullah Gul Awan, Fahad Saeed
Benchmarking mass spectrometry based proteomics algorithms using a simulated database. Netw. Model. Anal. Health Informatics Bioinform. 10 (1) (2021)
Muhammad Usman Tariq, Dennys Leyvay, Francisco Alberto Fernandez Limaz, Fahad Saeed
Graph Theoretic Approach for the Analysis of Comprehensive Mass-Spectrometry (MS/MS) Data of Dissolved Organic Matter. BIBM (2021)
Fahad Almuqhim, Fahad Saeed
ASD-SAENet: A Sparse Autoencoder, and Deep-Neural Network Model for Detecting Autism Spectrum Disorder (ASD) Using fMRI Data. Frontiers Comput. Neurosci. 15 (2021)
Umair Mohammad, Fahad Saeed
Search feasibility in distributed MS-proteomics big data. BCB (2021)
Oswaldo Artiles, Fahad Saeed
A Multi-Factorial Assessment of Functional Human Autistic Spectrum Brain Network Analysis. BIBM (2021)
Taban Eslami, Joseph S. Raiker, Fahad Saeed
Explainable and Scalable Machine-Learning Algorithms for Detection of Autism Spectrum Disorder using fMRI Data. CoRR (2020)
Taban Eslami, Fahad Almuqhim, Joseph S. Raiker, Fahad Saeed
Machine Learning Methods for Diagnosing Autism Spectrum Disorder and Attention- Deficit/Hyperactivity Disorder Using Functional and Structural MRI: A Survey. Frontiers Neuroinformatics 14 (2020)
Fahad Saeed
Communication Lower-Bounds for Distributed-Memory Computations for Mass Spectrometry based Omics Data. CoRR (2020)
Mohammed Aledhari, Rehma Razzak, Reza M. Parizi, Fahad Saeed
Federated Learning: A Survey on Enabling Technologies, Protocols, and Applications. IEEE Access 8 (2020)
Taban Eslami, Vahid Mirjalili, Alvis Cheuk M. Fong, Angela R. Laird, Fahad Saeed
ASD-DiagNet: A hybrid learning approach for detection of Autism Spectrum Disorder using fMRI data. CoRR (2019)
Muhammad Haseeb, Fatima Afzali, Fahad Saeed
LBE: A Computational Load Balancing Algorithm for Speeding up Parallel Peptide Search in Mass-Spectrometry Based Proteomics. IPDPS Workshops (2019)
Mohammed Aledhari, Shelby Joji, Mohamed Hefeida, Fahad Saeed
Optimized CNN-based Diagnosis System to Detect the Pneumonia from Chest Radiographs. BIBM (2019)
Muhammad Haseeb, Fahad Saeed
Efficient Shared Peak Counting in Database Peptide Search Using Compact Data Structure for Fragment-Ion Index. BIBM (2019)
Taban Eslami, Fahad Saeed
Auto-ASD-Network: A Technique Based on Deep Learning and Support Vector Machines for Diagnosing Autism Spectrum Disorder using fMRI Data. BCB (2019)
Taban Eslami, Vahid Mirjalili, Alvis Cheuk M. Fong, Angela R. Laird, Fahad Saeed
ASD-DiagNet: A Hybrid Learning Approach for Detection of Autism Spectrum Disorder Using fMRI Data. Frontiers Neuroinformatics 13 (2019)
Taban Eslami, Fahad Saeed
GPU-DFC: A GPU-Based Parallel Algorithm for Computing Dynamic-Functional Connectivity of Big fMRI Data. BigDataService (2019)
Oswaldo Artiles, Fahad Saeed
GPU-SFFT: A GPU based parallel algorithm for computing the Sparse Fast Fourier Transform (SFFT) of k-sparse signals. IEEE BigData (2019)
Muaaz Gul Awan, Taban Eslami, Fahad Saeed
GPU-DAEMON: GPU algorithm design, data management & optimization template for array based big omics data. Comput. Biol. Medicine 101 (2018)
Taban Eslami, Fahad Saeed
Similarity based classification of ADHD using singular value decomposition. CF (2018)
Mubashar Mehmood, Nadeem Javaid, Junaid Akram, Sadam Hussain Abbasi, Abdul Rahman, Fahad Saeed
Efficient Resource Distribution in Cloud and Fog Computing. NBiS (2018)
Mohammed Aledhari, Marianne Di Pierro, Fahad Saeed
A Fourier-Based Data Minimization Algorithm for Fast and Secure Transfer of Big Genomic Datasets. BigData Congress (2018)
Muhammad Usman Tariq, Fahad Saeed
Parallel Sampling-Pipeline for Indefinite Stream of Heterogeneous Graphs using OpenCL for FPGAs. IEEE BigData (2018)
Mohammed Aledhari, Ali F. Marhoon, Ali Hamad, Fahad Saeed
A New Cryptography Algorithm to Protect Cloud-Based Healthcare Services. CHASE (2017)
Sandino Vargas Perez, Fahad Saeed
A Hybrid MPI-OpenMP Strategy to Speedup the Compression of Big Next-Generation Sequencing Datasets. IEEE Trans. Parallel Distributed Syst. 28 (10) (2017)
Taban Eslami, Muaaz Gul Awan, Fahad Saeed
GPU-PCC: A GPU Based Technique to Compute Pairwise Pearson's Correlation Coefficients for Big fMRI Data. BCB (2017)
Sandino Vargas Perez, Fahad Saeed
Scalable data structure to compress next-generation sequencing files and its application to compressive genomics. BIBM (2017)
Muaaz Gul Awan, Fahad Saeed
An Out-of-Core GPU based Dimensionality Reduction Algorithm for Big Mass Spectrometry Data and Its Application in Bottom-up Proteomics. BCB (2017)
Muhammad Usman Tariq, Umer I. Cheema, Fahad Saeed
Power-efficient and highly scalable parallel graph sampling using FPGAs. ReConFig (2017)
Muaaz Gul Awan, Fahad Saeed
GPU-ArraySort: A Parallel, In-Place Algorithm for Sorting Large Number of Arrays. ICPP Workshops (2016)
Mohammed Aledhari, Mohamed S. Hefeida, Fahad Saeed
A Variable-Length Network Encoding Protocol for Big Genomic Data. WWIC (2016)
Fahad Saeed, Nurit Haspel, Hisham Al-Mubaid
Introduction to the selected papers from the 7th International Conference on Bioinformatics and Computational Biology (BICoB 2015). J. Bioinform. Comput. Biol. 14 (3) (2016)
Majdi Maabreh, Ajay Gupta, Fahad Saeed
A parallel peptide indexer and decoy generator for crux tide using OpenMP. HPCS (2016)
Mohamed S. Hefeida, Fahad Saeed
Data Aware Communication for Energy Harvesting Sensor Networks. WWIC (2016)
Muaaz Gul Awan, Fahad Saeed
MS-REDUCE: an ultrafast technique for reduction of big mass spectrometry data for high-throughput processing. Bioinform. 32 (10) (2016)
Mohammed Aledhari, Fahad Saeed
Design and Implementation of Network Transfer Protocol for Big Genomic Data. BigData Congress (2015)
Fahad Saeed
Big data proteogenomics and high performance computing: Challenges and opportunities. GlobalSIP (2015)
Sandino Vargas Perez, Fahad Saeed
A Parallel Algorithm for Compression of Big Next-Generation Sequencing Datasets. TrustCom/BigDataSE/ISPA (3) (2015)
Fahad Saeed, Jason D. Hoffert, Mark A. Knepper
CAMS-RS: Clustering Algorithm for Large-Scale Mass Spectrometry Data Using Restricted Search Space and Intelligent Random Sampling. IEEE ACM Trans. Comput. Biol. Bioinform. 11 (1) (2014)
Fahad Saeed, Hisham Al-Mubaid, Bhaskar DasGupta
Foreword. J. Bioinform. Comput. Biol. 12 (5) (2014)
Fahad Saeed, Jason D. Hoffert, Trairak Pisitkun, Mark A. Knepper
Exploiting thread-level and instruction-level parallelism to cluster mass spectrometry data using multicore architectures. Netw. Model. Anal. Health Informatics Bioinform. 3 (1) (2014)
Bhaskar DasGupta, Hisham Al-Mubaid, Fahad Saeed
Foreword to the Special Issue on Selected Papers from the 5th International Conference on Bioinformatics and Computational Biology (Bicob 2013). J. Bioinform. Comput. Biol. 11 (5) (2013)
Fahad Saeed, Jason D. Hoffert, Mark A. Knepper
A high performance algorithm for clustering of large-scale protein mass spectrometry data using multi-core architectures. ASONAM (2013)
Fahad Saeed, Trairak Pisitkun, Mark A. Knepper, Jason D. Hoffert
An Efficient Algorithm for Clustering of Large-Scale Mass Spectrometry Data CoRR (2013)
Fahad Saeed, Trairak Pisitkun, Mark A. Knepper, Jason D. Hoffert
An efficient algorithm for clustering of large-scale mass spectrometry data. BIBM (2012)
Fahad Saeed, Trairak Pisitkun, Jason D. Hoffert, Guanghui Wang, Marjan Gucek, Mark A. Knepper
An efficient dynamic programming algorithm for phosphorylation site assignment of large-scale mass spectrometry data. BIBM Workshops (2012)
Fahad Saeed, Alan Perez-Rathke, Jaroslaw Gwarnicki, Tanya Y. Berger-Wolf, Ashfaq A. Khokhar
A high performance multiple sequence alignment system for pyrosequencing reads from multiple reference genomes. J. Parallel Distributed Comput. 72 (1) (2012)
Fahad Saeed, Jason D. Hoffert, Trairak Pisitkun, Mark A. Knepper
High performance phosphorylation site assignment algorithm for mass spectrometry data using multicore systems. BCB (2012)
Fahad Saeed, Trairak Pisitkun, Mark A. Knepper, Jason D. Hoffert
Mining Temporal Patterns from iTRAQ Mass Spectrometry(LC-MS/MS) Data CoRR (2011)
Fahad Saeed, Trairak Pisitkun, Mark A. Knepper, Jason D. Hoffert
Mining Temporal Patterns from iTRAQ Mass Spectrometry(LC-MS/MS) Data. BICoB (2011)
Fahad Saeed
Pyro-Align: Sample-Align based Multiple Alignment system for Pyrosequencing Reads of Large Number CoRR (2009)
Fahad Saeed, Ashfaq A. Khokhar
A domain decomposition strategy for alignment of multiple biological sequences on multiprocessor platforms. J. Parallel Distributed Comput. 69 (7) (2009)
Fahad Saeed, Ashfaq A. Khokhar
Sample-Align-D: A High Performance Multiple Sequence Alignment System using Phylogenetic Sampling and Domain Decomposition CoRR (2009)
Fahad Saeed, Ashfaq A. Khokhar
An Overview of Multiple Sequence Alignment Systems CoRR (2009)
Fahad Saeed, Ashfaq A. Khokhar, Osvaldo Zagordi, Niko Beerenwinkel
Multiple Sequence Alignment System for Pyrosequencing Reads. BICoB (2009)
Fahad Saeed, Ashfaq A. Khokhar
A Domain Decomposition Strategy for Alignment of Multiple Biological Sequences on Multiprocessor Platforms CoRR (2009)
Fahad Saeed, Ashfaq A. Khokhar
Sample-Align-D: A high performance Multiple Sequence Alignment system using phylogenetic sampling and domain decomposition. IPDPS (2008)