Mark A. Knepper

Publication Activity (10 Years)

Years Active: 1995-2019
Publications (10 Years): 2

Top Topics

Level Parallelism

Mass Spectrometry Data

Clustering Algorithm

Top Venues

IEEE ACM Trans. Comput. Biol. Bioinform.

Netw. Model. Anal. Health Informatics Bioinform.

Publications

Thammakorn Saethang, Kenneth Hodge, Chin-Rang Yang, Yue Zhao, Ingorn Kimkong, Mark A. Knepper, Trairak Pisitkun
PTM-Logo: a program for generation of sequence logos based on position-specific background amino-acid probabilities. Bioinform. 35 (24) (2019)
Thammakorn Saethang, Kenneth Hodge, Ingorn Kimkong, D. Michael Payne, Mark A. Knepper, Trairak Pisitkun
AbDesigner3D: a structure-guided tool for peptide-based antibody production. Bioinform. 34 (12) (2018)
Fahad Saeed, Jason D. Hoffert, Mark A. Knepper
CAMS-RS: Clustering Algorithm for Large-Scale Mass Spectrometry Data Using Restricted Search Space and Intelligent Random Sampling. IEEE ACM Trans. Comput. Biol. Bioinform. 11 (1) (2014)
Fahad Saeed, Jason D. Hoffert, Trairak Pisitkun, Mark A. Knepper
Exploiting thread-level and instruction-level parallelism to cluster mass spectrometry data using multicore architectures. Netw. Model. Anal. Health Informatics Bioinform. 3 (1) (2014)
Fahad Saeed, Jason D. Hoffert, Mark A. Knepper
A high performance algorithm for clustering of large-scale protein mass spectrometry data using multi-core architectures. ASONAM (2013)
Fahad Saeed, Trairak Pisitkun, Mark A. Knepper, Jason D. Hoffert
An Efficient Algorithm for Clustering of Large-Scale Mass Spectrometry Data CoRR (2013)
Fahad Saeed, Trairak Pisitkun, Mark A. Knepper, Jason D. Hoffert
An efficient algorithm for clustering of large-scale mass spectrometry data. BIBM (2012)
Fahad Saeed, Trairak Pisitkun, Jason D. Hoffert, Guanghui Wang, Marjan Gucek, Mark A. Knepper
An efficient dynamic programming algorithm for phosphorylation site assignment of large-scale mass spectrometry data. BIBM Workshops (2012)
Fahad Saeed, Jason D. Hoffert, Trairak Pisitkun, Mark A. Knepper
High performance phosphorylation site assignment algorithm for mass spectrometry data using multicore systems. BCB (2012)
Fahad Saeed, Trairak Pisitkun, Mark A. Knepper, Jason D. Hoffert
Mining Temporal Patterns from iTRAQ Mass Spectrometry(LC-MS/MS) Data CoRR (2011)
Fahad Saeed, Trairak Pisitkun, Mark A. Knepper, Jason D. Hoffert
Mining Temporal Patterns from iTRAQ Mass Spectrometry(LC-MS/MS) Data. BICoB (2011)
Harold E. Layton, E. Bruce Pitman, Mark A. Knepper
A Dynamic Numerical Method for Models of the Urine Concentrating Mechanism. SIAM J. Appl. Math. 55 (5) (1995)