Scalable data structure to compress next-generation sequencing files and its application to compressive genomics.
Sandino Vargas PerezFahad SaeedPublished in: BIBM (2017)
Keyphrases
- data structure
- compressed data
- data compression
- recent advances
- file structure
- data types
- efficient data structures
- compressive sensing
- quadtree
- text mining
- high throughput
- main memory
- memory efficient
- index structure
- metadata
- highly scalable
- compressed text
- file transfer
- linked list
- genomic sequences
- systems biology
- suffix tree
- frequent patterns