Kevin Molloy

Publication Activity (10 Years)

Years Active: 2010-2022
Publications (10 Years): 14

Top Topics

Software Platform

Computational Biology

Protein Structure

Top Venues

Adv. Artif. Intell.

Publications

Amélie Barozet, Kevin Molloy, Marc Vaisset, Christophe Zanon, Pierre Fauret, Thierry Siméon, Juan Cortés
MoMA-LoopSampler: a web server to exhaustively sample protein loop conformations. Bioinform. 38 (2) (2022)
Amélie Barozet, Kevin Molloy, Marc Vaisset, Thierry Siméon, Juan Cortés
A reinforcement-learning-based approach to enhance exhaustive protein loop sampling. Bioinform. 36 (4) (2020)
Nathan Moore, Kevin Molloy, William Lovo, Sven Mayer, Pawel W. Wozniak, Michael Stewart
POST: A Machine Learning Based Paper Organization and Scheduling Tool. GROUP (Companion) (2020)
Kevin Molloy, Laurent Denarie, Marc Vaisset, Thierry Siméon, Juan Cortés
Simultaneous system design and path planning: A sampling-based algorithm. Int. J. Robotics Res. 38 (2-3) (2019)
Kevin Molloy, Erion Plaku, Amarda Shehu
ROMEO: A Plug-and-play Software Platform of Robotics-inspired Algorithms for Modeling Biomolecular Structures and Motions. CoRR (2019)
Daniel Veltri, Kevin Molloy
Employing Deep Learning to Study Biomolecules. BCB (2019)
Filip Jagodzinski, Brian Y. Chen, Kevin Molloy
ACM-BCB 2018 Computational Structural Bioinformatics Workshop (CSBW) Chairs' Welcome. BCB (2018)
Alejandro Estaña, Kevin Molloy, Marc Vaisset, Nathalie Sibille, Thierry Siméon, Pau Bernadó, Juan Cortés
Hybrid parallelization of a multi-tree path search algorithm: Application to highly-flexible biomolecules. Parallel Comput. 77 (2018)
Kevin Molloy, Nasrin Akhter, Amarda Shehu
Modeling Macromolecular Structures and Motions: Computational Methods for Sampling and Analysis of Energy Landscapes. BCB (2018)
Kevin Molloy, David Morris, Amarda Shehu
ACM-BCB '17 Tutorial: Robotics-inspired Algorithms for Modeling Protein Structures and Motions. BCB (2017)
Nurit Haspel, Amarda Shehu, Kevin Molloy
The 2017 Computational Structural Bioinformatics Workshop: CSBW 2017. BCB (2017)
Kevin Molloy, Rudy Clausen, Amarda Shehu
A stochastic roadmap method to model protein structural transitions. Robotica 34 (8) (2016)
Laurent Denarie, Kevin Molloy, Marc Vaisset, Thierry Siméon, Juan Cortés
Combining System Design and Path Planning. WAFR (2016)
Kevin Molloy, Amarda Shehu
Interleaving Global and Local Search for Protein Motion Computation. ISBRA (2015)
Kevin Molloy, M. Jennifer Van, Daniel Barbará, Amarda Shehu
Exploring representations of protein structure for automated remote homology detection and mapping of protein structure space. BMC Bioinform. 15 (S-8) (2014)
Kevin Molloy, Sameh N. Saleh, Amarda Shehu
Probabilistic Search and Energy Guidance for Biased Decoy Sampling in Ab Initio Protein Structure Prediction. IEEE ACM Trans. Comput. Biol. Bioinform. 10 (5) (2013)
Kevin Molloy, M. Jennifer Van, Daniel Barbará, Amarda Shehu
Higher-order representations of protein structure space. ICCABS (2013)
Kevin Molloy, Amarda Shehu
Biased decoy sampling to aid the selection of near-native protein conformations. BCB (2012)
Kevin Molloy, Amarda Shehu
A tree-based search to bias sampling of protein decoy conformations. BIBM Workshops (2012)
Kevin Molloy, Amarda Shehu
A robotics-inspired method to sample conformational paths connecting known functionally-relevant structures in protein systems. BIBM Workshops (2012)
Kevin Molloy, Amarda Shehu
Mapping conformational pathways between known functional protein states. BIBM Workshops (2012)
Brian S. Olson, Kevin Molloy, S. Farid Hendi, Amarda Shehu
Guiding Probabilistic Search of the protein conformational Space with Structural Profiles. J. Bioinform. Comput. Biol. 10 (3) (2012)
Brian S. Olson, Irina Hashmi, Kevin Molloy, Amarda Shehu
Basin Hopping as a General and Versatile Optimization Framework for the Characterization of Biological Macromolecules. Adv. Artif. Intell. 2012 (2012)
Brian S. Olson, Kevin Molloy, Amarda Shehu
In Search of the protein Native State with a Probabilistic Sampling Approach. J. Bioinform. Comput. Biol. 9 (3) (2011)
Kevin Molloy, Amarda Shehu
Assembly of low-energy protein conformations with heterogeneous fragments. BIBM Workshops (2011)
Brian S. Olson, Kevin Molloy, Amarda Shehu
Enhancing Sampling of the Conformational Space Near the Protein Native State. BIONETICS (2010)