Florencio Pazos

Publication Activity (10 Years)

Years Active: 1997-2024
Publications (10 Years): 12

Top Topics

Protein Families

Chemical Compounds

Biological Pathways

Top Venues

Nucleic Acids Res.

Briefings Bioinform.

Publications

Jorge Novoa, Javier López-Ibáñez, Monica Chagoyen, Juan Antonio Garcia-Ranea, Florencio Pazos
CoMentG: comprehensive retrieval of generic relationships between biomedical concepts from the scientific literature. Database J. Biol. Databases Curation 2024 (2024)
Javier López-Ibáñez, Florencio Pazos, Monica Chagoyen
MBROLE3: improved functional enrichment of chemical compounds for metabolomics data analysis. Nucleic Acids Res. 51 (W1) (2023)
Borja Pitarch, Juan A. G. Ranea, Florencio Pazos
Protein residues determining interaction specificity in paralogous families. Bioinform. 37 (8) (2021)
Javier López-Ibáñez, Florencio Pazos, Monica Chagoyen
Predicting biological pathways of chemical compounds with a profile-inspired approach. BMC Bioinform. 22 (1) (2021)
Florencio Pazos, Monica Chagoyen
Characteristics and evolution of the ecosystem of software tools supporting research in molecular biology. Briefings Bioinform. 20 (4) (2019)
Javier López-Ibáñez, Laura T. Martín, Monica Chagoyen, Florencio Pazos
Bacterial Feature Finder (BaFF) - a system for extracting features overrepresented in sets of prokaryotic organisms. Bioinform. 35 (18) (2019)
Diego Garrido-Martín, Florencio Pazos
Effect of the sequence data deluge on the performance of methods for detecting protein functional residues. BMC Bioinform. 19 (1) (2018)
Sara González-Pérez, Florencio Pazos, Monica Chagoyen
Factors affecting interactome-based prediction of human genes associated with clinical signs. BMC Bioinform. 18 (1) (2017)
Javier López-Ibáñez, Florencio Pazos, Monica Chagoyen
MBROLE 2.0 - functional enrichment of chemical compounds. Nucleic Acids Res. 44 (Webserver-Issue) (2016)
Juan C. Oliveros, Mònica Franch, Daniel Tabas-Madrid, David San-León, Lluis Montoliu, Pilar Cubas, Florencio Pazos
Breaking-Cas - interactive design of guide RNAs for CRISPR-Cas experiments for ENSEMBL genomes. Nucleic Acids Res. 44 (Webserver-Issue) (2016)
Monica Chagoyen, Florencio Pazos
Characterization of clinical signs in the human interactome. Bioinform. 32 (12) (2016)
Monica Chagoyen, Juan A. García-Martín, Florencio Pazos
Practical analysis of specificity-determining residues in protein families. Briefings Bioinform. 17 (2) (2016)
David Ochoa, David de Juan, Alfonso Valencia, Florencio Pazos
Detection of significant protein coevolution. Bioinform. 31 (13) (2015)
Monica Chagoyen, Florencio Pazos
Tools for the functional interpretation of metabolomic experiments. Briefings Bioinform. 14 (6) (2013)
Daniel Lopez, Florencio Pazos
COPRED: prediction of fold, GO molecular function and functional residues at the domain level. Bioinform. 29 (14) (2013)
Daniel Lopez, Florencio Pazos
Concomitant prediction of function and fold at the domain level with GO-based profiles. BMC Bioinform. 14 (S-3) (2013)
Natalia Pietrosemoli, Daniel Lopez, Aldo Segura-Cabrera, Florencio Pazos
Computational Prediction of Important Regions in Protein Sequences [Life Sciences]. IEEE Signal Process. Mag. 29 (6) (2012)
Thilo Muth, Juan A. García-Martín, Antonio Rausell, David de Juan, Alfonso Valencia, Florencio Pazos
JDet: interactive calculation and visualization of function-related conservation patterns in multiple sequence alignments and structures. Bioinform. 28 (4) (2012)
Dorota Herman, David Ochoa, David de Juan, Daniel Lopez, Alfonso Valencia, Florencio Pazos
Selection of organisms for the co-evolution-based study of protein interactions. BMC Bioinform. 12 (2011)
Monica Chagoyen, Florencio Pazos
MBRole: enrichment analysis of metabolomic data. Bioinform. 27 (5) (2011)
David Ochoa, Florencio Pazos
Studying the co-evolution of protein families with the Mirrortree web server. Bioinform. 26 (10) (2010)
Monica Chagoyen, Florencio Pazos
Quantifying the biological significance of gene ontology biological processes - implications for the analysis of systems-wide data. Bioinform. 26 (3) (2010)
Juan C. Triviño, Florencio Pazos
Quantitative global studies of reactomes and metabolomes using a vectorial representation of reactions and chemical compounds. BMC Syst. Biol. 4 (2010)
José M. G. Izarzugaza, David de Juan, Carles Pons, Florencio Pazos, Alfonso Valencia
Enhancing the prediction of protein pairings between interacting families using orthology information. BMC Bioinform. 9 (2008)
Angela del Pozo, Florencio Pazos, Alfonso Valencia
Defining functional distances over Gene Ontology. BMC Bioinform. 9 (2008)
Florencio Pazos, Antonio Rausell, Alfonso Valencia
Phylogeny-independent detection of functional residues. Bioinform. 22 (12) (2006)
Angel Carro, Michael L. Tress, David de Juan, Florencio Pazos, Pedro Lopez-Romero, Antonio del Sol, Alfonso Valencia, Ana María Rojas
TreeDet: a web server to explore sequence space. Nucleic Acids Res. 34 (Web-Server-Issue) (2006)
José M. G. Izarzugaza, David de Juan, Carles Pons, Juan A. G. Ranea, Alfonso Valencia, Florencio Pazos
TSEMA: interactive prediction of protein pairings between interacting families. Nucleic Acids Res. 34 (Web-Server-Issue) (2006)
Florencio Pazos, David Guijas, Alfonso Valencia, Victor de Lorenzo
MetaRouter: bioinformatics for bioremediation. Nucleic Acids Res. 33 (Database-Issue) (2005)
Manuel Gómez, Ramón Alonso-Allende, Florencio Pazos, Osvaldo Graña, David de Juan, Alfonso Valencia
Accessible Protein Interaction Data for Network Modeling. Structure of the Information and Available Repositories. Trans. Comp. Sys. Biology 1 (2005)
Osvaldo Graña, Volker A. Eyrich, Florencio Pazos, Burkhard Rost, Alfonso Valencia
EVAcon: a protein contact prediction evaluation service. Nucleic Acids Res. 33 (Web-Server-Issue) (2005)
Florencio Pazos, David Guijas, Manuel J. Gómez, Almudena Trigo, Victor de Lorenzo, Alfonso Valencia
The Biodegradation Network, a New Scenario for Computational Systems Biology Research. CMSB (2004)
Alireza Tamaddoni-Nezhad, Antonis C. Kakas, Stephen Muggleton, Florencio Pazos
Modelling Inhibition in Metabolic Pathways Through Abduction and Induction. ILP (2004)
Ingrid Y. Y. Koh, Volker A. Eyrich, Marc A. Martí-Renom, Dariusz Przybylski, Mallur S. Madhusudhan, Narayanan Eswar, Osvaldo Graña, Florencio Pazos, Alfonso Valencia, Andrej Sali, Burkhard Rost
EVA: evaluation of protein structure prediction servers. Nucleic Acids Res. 31 (13) (2003)
Volker A. Eyrich, Marc A. Martí-Renom, Dariusz Przybylski, Mallur S. Madhusudhan, András Fiser, Florencio Pazos, Alfonso Valencia, Andrej Sali, Burkhard Rost
EVA: continuous automatic evaluation of protein structure prediction servers. Bioinform. 17 (12) (2001)
Florencio Pazos, Burkhard Rost, Alfonso Valencia
A platform for integrating threading results with protein family analyses. Bioinform. 15 (12) (1999)
Florencio Pazos, Luis Sánchez-Pulido, Juan Antonio Garcia-Ranca, Miguel A. Andrade, Silvia Atrian, Alfonso Valencia
Comparative Analysis of Different Methods for the Detection of Specificity Regions in Protein Families. BCEC (1997)
Florencio Pazos, O. Olmea, Alfonso Valencia
A graphical interface for correlated mutations and other protein structure prediction methods. Comput. Appl. Biosci. 13 (3) (1997)