Michael L. Tress

Publication Activity (10 Years)

Years Active: 2004-2023
Publications (10 Years): 9

Top Topics

Drosophila Melanogaster

Alternative Splicing

Manual Annotation

Top Venues

Nucleic Acids Res.

PLoS Comput. Biol.

Publications

Adam Frankish, Silvia Carbonell Sala, Mark Diekhans, Irwin Jungreis, Jane E. Loveland, Jonathan M. Mudge, Cristina Sisu, James C. Wright, Carme Arnan, If Barnes, Abhimanyu Banerjee, Ruth Bennett, Andrew E. Berry, Alexandra Bignell, Carles Boix, Ferriol Calvet Riera, Daniel Cerdán-Vélez, Fiona Cunningham, Claire Davidson, Sarah M. Donaldson, Cagatay Dursun, Reham Fatima, Stefano Giorgetti, Carlos García-Girón, Jose M. Gonzalez, Matthew Hardy, Peter W. Harrison, Thibaut Hourlier, Zoe Hollis, Toby Hunt, Benjamin James, Yunzhe Jiang, Rory Johnson, Mike P. Kay, Julien Lagarde, Fergal J. Martin, Laura Martínez Gómez, Surag Nair, Pengyu Ni, Fernando Pozo, Vivek Ramalingam, Magali Ruffier, Bianca M. Schmitt, Jacob M. Schreiber, Emily Steed, Marie-Marthe Suner, Dulika Sumathipala, Irina Sycheva, Barbara Uszczynska-Ratajczak, Elizabeth Wass, Yucheng T. Yang, Andrew D. Yates, Zahoor Zafrulla, Jyoti Choudhary, Mark Gerstein, Roderic Guigó, Tim J. P. Hubbard, Manolis Kellis, Anshul Kundaje, Benedict Paten, Michael L. Tress, Paul Flicek
GENCODE: reference annotation for the human and mouse genomes in 2023. Nucleic Acids Res. 51 (D1) (2023)
Jose Manuel Rodriguez, Fernando Pozo, Daniel Cerdán-Vélez, Tomás Di Domenico, Jesús Vázquez, Michael L. Tress
APPRIS: selecting functionally important isoforms. Nucleic Acids Res. 50 (D1) (2022)
Adam Frankish, Mark Diekhans, Irwin Jungreis, Julien Lagarde, Jane E. Loveland, Jonathan M. Mudge, Cristina Sisu, James C. Wright, Joel Armstrong, If Barnes, Andrew E. Berry, Alexandra Bignell, Carles Boix, Silvia Carbonell Sala, Fiona Cunningham, Tomás Di Domenico, Sarah M. Donaldson, Ian T. Fiddes, Carlos García-Girón, Jose M. Gonzalez, Tiago Grego, Matthew Hardy, Thibaut Hourlier, Kevin L. Howe, Toby Hunt, Osagie G. Izuogu, Rory Johnson, Fergal J. Martin, Laura Martínez, Shamika Mohanan, Paul Muir, Fabio C. P. Navarro, Anne Parker, Baikang Pei, Fernando Pozo, Ferriol Calvet Riera, Magali Ruffier, Bianca M. Schmitt, Eloise Stapleton, Marie-Marthe Suner, Irina Sycheva, Barbara Uszczynska-Ratajczak, Maxim Y. Wolf, Jinrui Xu, Yucheng T. Yang, Andrew D. Yates, Daniel R. Zerbino, Yan Zhang, Jyoti Choudhary, Mark Gerstein, Roderic Guigó, Tim J. P. Hubbard, Manolis Kellis, Benedict Paten, Michael L. Tress, Paul Flicek
GENCODE 2021. Nucleic Acids Res. 49 (Database-Issue) (2021)
Jose Manuel Rodriguez, Fernando Pozo, Tomás Di Domenico, Jesús Vázquez, Michael L. Tress
An analysis of tissue-specific alternative splicing at the protein level. PLoS Comput. Biol. 16 (10) (2020)
Adam Frankish, Mark Diekhans, Anne-Maud Ferreira, Rory Johnson, Irwin Jungreis, Jane E. Loveland, Jonathan M. Mudge, Cristina Sisu, James C. Wright, Joel Armstrong, If Barnes, Andrew E. Berry, Alexandra Bignell, Silvia Carbonell Sala, Jacqueline Chrast, Fiona Cunningham, Tomás Di Domenico, Sarah M. Donaldson, Ian T. Fiddes, Carlos García-Girón, Jose M. Gonzalez, Tiago Grego, Matthew Hardy, Thibaut Hourlier, Toby Hunt, Osagie G. Izuogu, Julien Lagarde, Fergal J. Martin, Laura Martínez, Shamika Mohanan, Paul Muir, Fabio C. P. Navarro, Anne Parker, Baikang Pei, Fernando Pozo, Magali Ruffier, Bianca M. Schmitt, Eloise Stapleton, Marie-Marthe Suner, Irina Sycheva, Barbara Uszczynska-Ratajczak, Jinrui Xu, Andrew D. Yates, Daniel R. Zerbino, Yan Zhang, Bronwen L. Aken, Jyoti Choudhary, Mark Gerstein, Roderic Guigó, Tim J. P. Hubbard, Manolis Kellis, Benedict Paten, Alexandre Reymond, Michael L. Tress, Paul Flicek
GENCODE reference annotation for the human and mouse genomes. Nucleic Acids Res. 47 (Database-Issue) (2019)
Jose Manuel Rodriguez, Juan Rodriguez-Rivas, Tomás Di Domenico, Jesús Vázquez, Alfonso Valencia, Michael L. Tress
APPRIS 2017: principal isoforms for multiple gene sets. Nucleic Acids Res. 46 (Database-Issue) (2018)
Federico Abascal, Iakes Ezkurdia, Juan Rodriguez-Rivas, Jose Manuel Rodriguez, Angela del Pozo, Jesús Vázquez, Alfonso Valencia, Michael L. Tress
Alternatively Spliced Homologous Exons Have Ancient Origins and Are Highly Expressed at the Protein Level. PLoS Comput. Biol. 11 (6) (2015)
Federico Abascal, Michael L. Tress, Alfonso Valencia
Alternative splicing and co-option of transposable elements: the case of TMPO/LAP2α and ZNF451 in mammals. Bioinform. 31 (14) (2015)
Jose Manuel Rodriguez, Angel Carro, Alfonso Valencia, Michael L. Tress
APPRIS WebServer and WebServices. Nucleic Acids Res. 43 (Webserver-Issue) (2015)
Paolo Maietta, Gonzalo López, Angel Carro, Benjamin J. Pingilley, Leticia G. Leon, Alfonso Valencia, Michael L. Tress
FireDB: a compendium of biological and pharmacologically relevant ligands. Nucleic Acids Res. 42 (Database-Issue) (2014)
Jose Manuel Rodriguez, Paolo Maietta, Iakes Ezkurdia, Alessandro Pietrelli, Jan-Jaap Wesselink, Gonzalo López, Alfonso Valencia, Michael L. Tress
APPRIS: annotation of principal and alternative splice isoforms. Nucleic Acids Res. 41 (Database-Issue) (2013)
Gonzalo López, Paolo Maietta, Jose Manuel Rodriguez, Alfonso Valencia, Michael L. Tress
- advances in the prediction of functionally important residues. Nucleic Acids Res. 39 (Web-Server-Issue) (2011)
Iakes Ezkurdia, Lisa Bartoli, Piero Fariselli, Rita Casadio, Alfonso Valencia, Michael L. Tress
Progress and challenges in predicting protein-protein interaction sites. Briefings Bioinform. 10 (3) (2009)
Michael L. Tress, Jan-Jaap Wesselink, Adam Frankish, Gonzalo López, Nick Goldman, Ari Löytynoja, Tim Massingham, Fabio Pardi, Simon Whelan, Jennifer L. Harrow, Alfonso Valencia
Determination and validation of principal gene products. Bioinform. 24 (1) (2008)
Gonzalo López, Alfonso Valencia, Michael L. Tress
FireDB - a database of functionally important residues from proteins of known structure. Nucleic Acids Res. 35 (Database-Issue) (2007)
Gonzalo López, Alfonso Valencia, Michael L. Tress
- prediction of functionally important residues using structural templates and alignment reliability. Nucleic Acids Res. 35 (Web-Server-Issue) (2007)
Michael L. Tress, Domenico Cozzetto, Anna Tramontano, Alfonso Valencia
An analysis of the Sargasso Sea resource and the consequences for database composition. BMC Bioinform. 7 (2006)
Angel Carro, Michael L. Tress, David de Juan, Florencio Pazos, Pedro Lopez-Romero, Antonio del Sol, Alfonso Valencia, Ana María Rojas
TreeDet: a web server to explore sequence space. Nucleic Acids Res. 34 (Web-Server-Issue) (2006)
Michael L. Tress, Osvaldo Graña, Alfonso Valencia
SQUARE-determining reliable regions in sequence alignments. Bioinform. 20 (6) (2004)